HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.2	0.6	0.00016	0.0097	1	23	271	293
2	15.9	0.2	0.00021	0.012	1	23	299	321
3	8.5	1.0	0.047	2.8	1	13	327	339

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 0.00016
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y Cp+C + ++ k++L++H+++H
  KWMTBOMO16831 271 YCCPECQMAYREKDELEQHLSVH 293
                    89*******************99 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 0.00021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cg   krk++L+rH   H
  KWMTBOMO16831 299 FICGICGAGLKRKEHLERHKLGH 321
                    78*****************9877 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.047
                    EEETTTTEEESSH CS
        zf-C2H2   1 ykCpdCgksFkrk 13 
                    y+C++C+k Fkr+
  KWMTBOMO16831 327 YVCSVCTKGFKRR 339
                    9**********96 PP