Silkworm Genome Informatics Database

Gene

KWMTBOMO16831

Pre Gene Modal

BGIBMGA005626

Annotation

PREDICTED:_zinc_finger_protein_with_KRAB_and_SCAN_domains_1_isoform_X4_[Bombyx_mori]

Location

Bomo_Scaf366(+):1026-13981 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.671

CDS

ATGGGCGAGGGTGGCATGCAGTATGTCCGGTCGCTGGACGGCGGCACCAGTTTGCAGCCCACTCCTCAACTCATCTCCGTGCCTATAGCGTTGCCCGGAGTCAAACCTGGTGATCCGCAACCAACGGTGCAAATACAGGTGCTCAATCCGAATCTACTACAAACTCAGCAACAACCGAAATATCATATGCAAATACCCATACAGGGATTACAGAATGGGCTCCAAGTATTAACCGCTCTCTCACCAGATCTGCAAGTTATACAGCCTTCACAAACTCGAACACATGACAGTGAACATAACCAGCCTACTATGCATCAGGTATTCATAACACCGAACCAACAGATTATTATAAATGGTCCGGATAAAGCTTTGAACAACAACACAGACAACAATAATCCGAACATCACTAATATTACCATCAAAGAGGAATGTGAAGAAAACATTGATGATGAAAGTTCACAAGGGACTGAGACAAGTGACAGTATGTCATATCCATCGAACCCCAGTGATGAGGCGCTGCTAATAAAGTACCTCAACCAATTTCCGCAGGAAAAACAATCATTGCCTGCTTCTCTACAACAGTTCTTAAGGCTGAAACATACTGAGGCAAAAAAGCAGATGATCGAAGTTGAAGTTCCACCAGAGCACGACAAAACAGTCGAGGCCGTCGCTGAAGCCATTCTCAGTGAAGACGGCACTTTAAGAATAAAAAGCAAGAAAAGAAAGAAATACAAAAAGAAGCCAAGTAAACCGGCCCGACCGAAGCCAGGGCAGGTTGTCATAGCGACTGCCGCCGATGGAACACCCATATATTGCTGTCCAGAATGTCAGATGGCATACCGAGAAAAGGATGAACTGGAACAACACCTTAGTGTTCACAAGATCGAGAGGAGATTTATATGTGGAATCTGTGGCGCTGGCTTGAAACGCAAAGAGCATCTAGAGAGACACAAGCTAGGACACAACCCGGAGCGGCCCTACGTGTGCTCCGTCTGCACCAAGGGCTTCAAGCGACGGAACATCTCAACCTCCACGCCGTGCTGCACTCCGGGGTCAAGACTGAGATATGCGGAGAATGCGGGAAAGGCTTCTACCGTAAGGATCACCTCCGCAAGCACACACGGTCGCACGAGAGTAAGCGAGCTCGCGAGCAAGCAGACGCGGCTACTGCTGAGAAGCCACAACCTGCCAACAACAATACTTCTAGTATACCCGAGATCACCATTCATGTTTAATTCCAACGAGTTCAAGCATGCAAGTGCCCATCGAGATAAACATCCCCCAGCACCTCGTGACGTCACTGGCGTCAGCGCAGCAGCAGCAGCAGCAGCAGCAACAAGCACACGAAACACTGGACGCCCTATTGGCCCAACACACCTGACACTCTGCTTAGCGGCCGCCCACACCGACGGGGAAACTCACACCATGCCTTCGATCCCAGCCCTAGATAAATGGGTAAATGCATAG

Protein

MGEGGMQYVRSLDGGTSLQPTPQLISVPIALPGVKPGDPQPTVQIQVLNPNLLQTQQQPKYHMQIPIQGLQNGLQVLTALSPDLQVIQPSQTRTHDSEHNQPTMHQVFITPNQQIIINGPDKALNNNTDNNNPNITNITIKEECEENIDDESSQGTETSDSMSYPSNPSDEALLIKYLNQFPQEKQSLPASLQQFLRLKHTEAKKQMIEVEVPPEHDKTVEAVAEAILSEDGTLRIKSKKRKKYKKKPSKPARPKPGQVVIATAADGTPIYCCPECQMAYREKDELEQHLSVHKIERRFICGICGAGLKRKEHLERHKLGHNPERPYVCSVCTKGFKRRNISTSTPCCTPGSRLRYAENAGKASTVRITSASTHGRTRVSELASKQTRLLLRSHNLPTTILLVYPRSPFMFNSNEFKHASAHRDKHPPAPRDVTGVSAAAAAAAATSTRNTGRPIGPTHLTLCLAAAHTDGETHTMPSIPALDKWVNA

Uniprot

H9J7Y4 A0A2A4JSF0 A0A212EPH2 A0A437BCA5 A0A194QB48 A0A1W4WG04 + More
A0A1W4W4I1 A0A139WD49 D2A549 A0A1Y1MA85

Pubmed

19121390 22118469 26354079 18362917 19820115 28004739 + More

EMBL

BABH01020164 NWSH01000703 PCG74696.1 AGBW02013457 OWR43392.1 RSAL01000090 + More
RVE48077.1 KQ459232 KPJ02654.1 KQ971361 KYB25870.1 EFA05314.2 GEZM01037821 JAV81908.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000283053 UP000053268 UP000192223 + More
UP000007266

PRIDE

H9J7Y4

Pfam

PF00096 zf-C2H2

Interpro

IPR036236 Znf_C2H2_sf + More
IPR013087 Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9J7Y4 A0A2A4JSF0 A0A212EPH2 A0A437BCA5 A0A194QB48 A0A1W4WG04 + More
A0A1W4W4I1 A0A139WD49 D2A549 A0A1Y1MA85

PDB

5EI9 E-value=1.60049e-10, Score=160

KEGG

101741897 no KO assigned | (RefSeq) zinc finger protein 311

GO

GO:0003676 GO:0046872 GO:0016020 GO:0004888 GO:0007166 GO:0016773 GO:0006096 GO:0006281 GO:0006259

Length:

488

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00178

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00257

outside

1 - 488

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree