HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.0	1.4	0.067	4	1	23	70	93
2	12.0	6.3	0.0035	0.21	1	23	103	125
3	17.2	0.7	8.1e-05	0.0048	2	23	132	153
4	21.6	0.5	3.1e-06	0.00019	2	23	160	181
5	24.7	1.6	3.3e-07	2e-05	1	23	187	209
6	15.5	0.0	0.00029	0.017	1	21	215	235

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.067
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   y+C+ C++ F     L++H+   H
  KWMTBOMO16788 70 YVCDFCPEEFMYMRCLQAHRTNaH 93
                   99*****************98777 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0035
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C++ F +  +L+rH +tH
  KWMTBOMO16788 103 HRCWKCSRQFAHLNSLRRHFMTH 125
                    79*******************99 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 8.1e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cgk  +++++Lk Hi++H
  KWMTBOMO16788 132 LCNVCGKAMSSRDHLKLHINIH 153
                    5*******************99 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 3.1e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ Cgk F  ksnLk H r+H
  KWMTBOMO16788 160 VCSTCGKGFVKKSNLKLHERVH 181
                    6*******************99 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 3.3e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk F+++s L+ H r H
  KWMTBOMO16788 187 YVCSHCGKAFSQRSTLVIHERYH 209
                    9********************99 PP

  == domain 6  score: 15.5 bits;  conditional E-value: 0.00029
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C  Cg+ F  k +L +H++
  KWMTBOMO16788 215 YVCALCGRGFVAKGLLSVHLK 235
                    99*****************97 PP