HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.5	0.3	0.0053	0.32	3	23	39	59
2	17.0	0.5	9.4e-05	0.0057	1	23	65	87
3	23.2	1.9	1e-06	6.1e-05	1	23	93	115
4	22.8	4.2	1.3e-06	7.8e-05	2	23	122	143
5	17.7	3.4	5.5e-05	0.0033	1	23	211	233
6	17.8	0.7	5.3e-05	0.0032	2	23	239	260
7	17.7	4.7	5.6e-05	0.0034	1	23	304	326
8	6.3	0.2	0.24	14	3	19	338	354
9	22.9	4.8	1.2e-06	7.2e-05	1	23	416	438
10	24.4	2.4	4.2e-07	2.5e-05	1	23	444	466

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0053
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C +C+++ ++k  L++H+ +H
  KWMTBOMO16572 39 CVYCTYKANTKKALEKHLLVH 59
                   9*****************999 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.4e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y C++Cg   krk++L+rH   H
  KWMTBOMO16572 65 YLCGICGTGLKRKEHLERHTLEH 87
                   66*****************9998 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp+Cgk Fkrk++L+ H  tH
  KWMTBOMO16572  93 HVCPECGKGFKRKEHLNIHFATH 115
                    79*****************9999 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 1.3e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C+ksF rk++L++H++tH
  KWMTBOMO16572 122 ECFVCKKSFYRKDHLQKHMQTH 143
                    69*******************9 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 5.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C +C+k++krk++Lk H +tH
  KWMTBOMO16572 211 FICLICNKTYKRKDHLKLHSMTH 233
                    78*****************9999 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 5.3e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++Cgk +   ++L++H++tH
  KWMTBOMO16572 239 VCSECGKAYHKEEQLMAHMSTH 260
                    6********************9 PP

  == domain 7  score: 17.7 bits;  conditional E-value: 5.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C ++Fkrk +Lk H+++H
  KWMTBOMO16572 304 HICSICQRRFKRKQHLKIHLNVH 326
                    67*******************99 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.24
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    C++C++   + s+L++H
  KWMTBOMO16572 338 CSICNEELASASDLNNH 354
                    ***************** PP

  == domain 9  score: 22.9 bits;  conditional E-value: 1.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F+rk+++k H+++H
  KWMTBOMO16572 416 YVCKYCSKTFRRKDHYKIHLNIH 438
                    9********************99 PP

  == domain 10  score: 24.4 bits;  conditional E-value: 4.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + CpdCgk F rk++L++H ++H
  KWMTBOMO16572 444 FFCPDCGKGFYRKDHLQKHTQVH 466
                    78******************999 PP