HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.3	0.0	0.00015	0.009	3	23	7	32
2	19.5	0.2	1.5e-05	0.00092	1	23	40	67
3	9.4	4.6	0.023	1.4	1	23	73	97
4	13.4	0.2	0.0013	0.076	1	23	103	128
5	21.3	0.4	4.1e-06	0.00024	1	23	134	159

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 0.00015
                   ET....TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  3 Cp....dCgksFkrksnLkrHirt.H 23
                   Cp    dC+  F+++++L++Hi+t H
  KWMTBOMO16507  7 CPvvwvDCKLEFPTQDDLVKHINTdH 32
                   7777779*****************99 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.5e-05
                   EEET..TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCp..dCg...ksFkrksnLkrHirtH 23
                   ++C   +C+   k+Fk +++L++H+r+H
  KWMTBOMO16507 40 FVCRwvGCSrdeKPFKAQYMLVVHMRRH 67
                   899999*********************9 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.023
                   EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCp..dCgksFkrksnLkrHirtH 23
                   +kC+  +C k ++r +nLk+H+r+H
  KWMTBOMO16507 73 HKCTfeGCCKAYSRLENLKTHLRSH 97
                   7899999*****************9 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 0.0013
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    y+C+  +C k F++ s+  +H+++ H
  KWMTBOMO16507 103 YTCEypGCAKAFSNASDRAKHQNRtH 128
                    99*********************999 PP

  == domain 5  score: 21.3 bits;  conditional E-value: 4.1e-06
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    y+C+  +C+k+++++s+L++H +t H
  KWMTBOMO16507 134 YVCKapGCTKRYTDPSSLRKHVKTvH 159
                    99**********************99 PP