HMM length of domain: 89 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	37.3	1.8	8.6e-12	3.8e-09	6	89	11	86
2	-0.3	0.0	4.7	2.1e+03	50	61	306	325

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 8.6e-12
           THAP  6 CknrkkkkskkkvsfhrfPkdkelrkkWlkaikrkdkkkkkkskk...srvCskHFeeekkkkkkeeekkeskkrrkLkkdavPtif 89
                   C  ++++ + +k  f rfP d +++k+W+k ++++d    + +     ++vC+ HF++           + +k++++Lkk avP ++
  KWMTBOMO16482 11 CGIKERHLN-EKRFFARFPLDVNRCKEWVKIVGKEDLAYLQVHMLhdlKHVCEVHFSR----------RDFTKSKKRLKKRAVPKLN 86
                   444333332.2256779******************9998874433688********32..........234556677*******986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 4.7
           THAP  50 k........srvCskHFeee 61 
                    k         ++Cs  F+e 
  KWMTBOMO16482 306 KlapikkirAKLCSVVFNEI 325
                    03333334468999999543 PP