HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	6.5	1.9	0.2	12	2	23	191	212
2	11.1	0.1	0.0069	0.41	1	23	217	240
3	2.4	2.8	4.1	2.5e+02	2	23	247	268
4	11.4	1.7	0.0054	0.32	1	23	274	296
5	22.6	1.6	1.6e-06	9.5e-05	1	23	301	324
6	5.2	3.1	0.53	32	1	23	330	353

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.2
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp C k+  +k  ++ H+++H
  KWMTBOMO16390 191 TCPLCQKVLANKLTYNCHMQRH 212
                    8*******************99 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0069
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ Cgk F+   +L+ H  t H
  KWMTBOMO16390 217 YICESCGKGFPVFNELNIHKVTrH 240
                    89*****************98888 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 4.1
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C ++ + k  L  H+r H
  KWMTBOMO16390 247 ECNHCQYKAPCKFKLIEHLRLH 268
                    6*****9999999999999998 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0054
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg +F+r+   k+H+  H
  KWMTBOMO16390 274 FTCEKCGLTFRRRAIWKKHLVHH 296
                    89***********9999998776 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 1.6e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C+k+F r s+Lk H++  H
  KWMTBOMO16390 301 FQCQQCPKKFYRLSSLKEHMNNvH 324
                    89*******************988 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.53
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++Cg  +      +rH+   H
  KWMTBOMO16390 330 FSCTKCGCLYAKTRTVRRHLLEkH 353
                    89*****88888888888887766 PP