Silkworm Genome Informatics Database

Gene

KWMTBOMO16390

Annotation

PREDICTED:_zinc_finger_protein_492-like_[Papilio_xuthus]

Location

Bomo_Chr28(-):8129801-8131032 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Extracellular Reliability : 1.78 Nuclear Reliability : 2.112

CDS

ATGCTAAGTTTATTTGATGAGAAGAACACAGACGGCTTGAGCTGCTACGGGAAGTCTGTAATAAGTTTTGCCAATATTGTCCTTAAAACAAATGATAATTTACCTACTGCAATGTGCAAAAGTTGTTTATTGTTGCTCAAACAAGCAATACGCTTTAAATTTCTATGCGAATATAGTGCTATACGCTTGAAAAACTTGTTTGAAATAAGCAATACCGCGAATGGAGATTTAAAAGAAAATGTATGCCAATACGCGCTGTTTAACAATCATTTTCCTGATATAAATAGTAGAAAGACCAATAATAATACTACGAAGATCAACCCTAAGCAAGTCTCAGTTAATCCAAAATTAGCAGAACGAAAGTTTAGATGTTCAACTAAAAAAGAAAATTATAAAATTCACCAATCACGAATAAATAATAAGAGGCAGAACAATAATGATGCCATATACGATATATTTAACAGCGTCGATAGTGATTCGGAAACAAACGTACTAAAACCGACACTAAACTCAAAAGAGTCAACGAAAAAATCACAAAAACAAGCAAAAGAACGAATATTGACTAATTTAACTTGTCCATTATGCCAGAAAGTTCTAGCCAATAAGTTGACCTATAATTGCCATATGCAGAGGCACAACGGATGCCGATACATCTGCGAGAGCTGTGGCAAAGGATTTCCTGTATTCAACGAGTTAAACATACACAAAGTCACTCGGCACGGTACAGGGCAATATGTCGAATGTAACCACTGCCAATACAAAGCACCGTGCAAATTTAAGTTAATCGAACACTTGAGACTGCATACCGGCGAGCGGCCTTTCACGTGTGAAAAGTGCGGACTGACCTTCCGTCGTCGAGCCATTTGGAAGAAGCATTTGGTTCATCACTCTGAGAAAACTTTTCAATGTCAGCAGTGTCCGAAGAAGTTTTACCGCTTGTCAAGTCTTAAAGAGCACATGAATAACGTACATGATCGCTTATATATGTTCTCGTGTACTAAATGTGGATGCCTGTACGCCAAAACCAGAACAGTTCGGAGACATTTATTAGAAAAACATGGTATTCCTCGAGAATTGCAGGGCAAGATCTTAAGGGTCATGAAAGGGGGTAACAATGATTTTGGTGCTAAATAA

Protein

MLSLFDEKNTDGLSCYGKSVISFANIVLKTNDNLPTAMCKSCLLLLKQAIRFKFLCEYSAIRLKNLFEISNTANGDLKENVCQYALFNNHFPDINSRKTNNNTTKINPKQVSVNPKLAERKFRCSTKKENYKIHQSRINNKRQNNNDAIYDIFNSVDSDSETNVLKPTLNSKESTKKSQKQAKERILTNLTCPLCQKVLANKLTYNCHMQRHNGCRYICESCGKGFPVFNELNIHKVTRHGTGQYVECNHCQYKAPCKFKLIEHLRLHTGERPFTCEKCGLTFRRRAIWKKHLVHHSEKTFQCQQCPKKFYRLSSLKEHMNNVHDRLYMFSCTKCGCLYAKTRTVRRHLLEKHGIPRELQGKILRVMKGGNNDFGAK

Uniprot

A0A212FAV6 A0A2A4JP63 A0A1E1WDQ9 A0A194QKF1 A0A0L7KY29 A0A2A4K6V4 + More
A0A212F9Y0 A0A0N1PHJ4 A0A212F2R2 A0A2H1VCB0 A0A1E1WRS1 D6WKU4 A0A2P8Z5B1 A0A067R1T9 B4QXY6

Pubmed

22118469 26354079 26227816 18362917 19820115 29403074 + More
24845553 17994087

EMBL

AGBW02009422 OWR50857.1 NWSH01000917 PCG73546.1 GDQN01005946 JAT85108.1 + More
KQ459054 KPJ03936.1 JTDY01004503 KOB68070.1 NWSH01000116 PCG79390.1 AGBW02009549 OWR50541.1 KQ458863 KPJ04720.1 AGBW02010693 OWR48019.1 ODYU01001796 SOQ38489.1 GDQN01001528 JAT89526.1 KQ971343 EFA04018.2 PYGN01000189 PSN51689.1 KK852775 KDR16795.1 CM000364 EDX13723.1

Proteomes

UP000007151 UP000218220 UP000053268 UP000037510 UP000007266 UP000245037 + More
UP000027135 UP000000304

Pfam

PF07776 zf-AD + More
PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

A0A212FAV6 A0A2A4JP63 A0A1E1WDQ9 A0A194QKF1 A0A0L7KY29 A0A2A4K6V4 + More
A0A212F9Y0 A0A0N1PHJ4 A0A212F2R2 A0A2H1VCB0 A0A1E1WRS1 D6WKU4 A0A2P8Z5B1 A0A067R1T9 B4QXY6

PDB

5T0U E-value=5.08484e-14, Score=189

KEGG

101740854 no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF67.1-like

GO

GO:0005634 GO:0003676 GO:0008270 GO:0003677 GO:0046872 GO:0033557 GO:0005839 GO:0051603 GO:0046835 GO:0006281 GO:0006259

Length:

377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00728999999999999

Exp number, first 60 AAs:

0.00639

Total prob of N-in:

0.00574

outside

1 - 377

Pi

254.293926

Theta

209.613479

Tajima's D

0.686115

CLR

0.441929

CSRT

0.568521573921304

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics