Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO15866 | RXR-like | 9.5e-18 | 6.2e-17 | 1 | + View |
HMM length of domain: 202 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 62.0 1.0 6.2e-20 6.2e-17 2 115 252 389 Alignments for each domain: == domain 1 score: 62.0 bits; conditional E-value: 6.2e-20 RXR-like 2 cetaarlLfllVewaksipafseLpledqviLLrasWaelliLalaqtsiplsda..................qlllasglsvarnsaek...... 73 ce+aarlL ++ + pa + Lp+e qv+L+++sWael++L+l++ s ++s++ +a KWMTBOMO15866 252 CESAARLLAATARALAALPAATALPFEIQVTLFKKSWAELFVLGLCKLSHEMSLGtllpsmaghlhavlreraSGAAA-----------Ahapldd 336 9******************************************************77777777666666554433333...........1344444 PP RXR-like 74 ............evekildleevrvLqelvtklrdlqldatEyacLkaIvlfnp 115 e ++ + ++ +Lq+lv +++l+++++Eya+L+a+ +f+p KWMTBOMO15866 337 hapeisvwdytdERIA-EIISLLSRLQQLVAAMEQLRVTDREYAQLRALCFFSP 389 4444467767553333.3444999****************************99 PP |
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