Silkworm Genome Informatics Database

Gene

KWMTBOMO15866

Pre Gene Modal

BGIBMGA013363

Annotation

PREDICTED:_nuclear_orphan_receptor_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr27(+):337342-347825 View in EpiBrowser

Transcription factor

RXR-like

Location in the cell

Nuclear Reliability : 2.998

CDS

ATGGATGGTCAAGATCAGCTGGAAATGAAGTTCAGCAGTGGGAGTGATGTAGGTGGACTAGAGCTCTGTATAGTTTGTGGAGACCGAGCATCTGGAAGACATTATGGTGCTATTAGTTGTGAAGGCTGTAAAGGCTTTTTCAAGCGTTCAATCAGAAAGAAGCTCGGGTACCAGTGTCGAGGTACTATGAACTGTGAAGTGACCAAGCATCACCGGAACCGGTGCCAGTACTGCAGGCTGCAAAAGTGTCTTGCTTGCGGGATGAGGAGCGACTCGGTCCAGCACGAACGGAAGCCGATCGTCGACAAGAACAAGTCGGAGCCGCGGGACGGGCTGGCCGACCGGCAGGCCGCCTACTCCAAGCTGCTGGGACTCGCGGGCCAGGCTCCCAGCGCACAGCTGACCCCCAAGGAGGAGGCGGGCGAGGCGTTCGGCGCCGTGTCCCCCGCGCCCGCCATCAACTTCGCCCTGGCCGCCGCCGTCGCCTTCAACAAGAACTCAGTGTCTCCGTACCTGAACCCCGGCAGTCCTGGCGACATGGAGGGTGCCCGCAGACAACAGATCATGCTGCAAACGCAATTAGCCAAGAATCTCTTCAAAATGGGACAGTTTGGAGCCATCAACGAGTACCTGCAGTCGGCGTACGGCGCCGCGCCCGAGCCCCCGCCCCCCGCCGACGACGCGCGCCCCGACGAGATGGAGGTGTGCTCGGTGCTGGTGCCCGGCGGCGGCGCGCTGCCCCTGCACGCCGCCTGCGAGAGCGCCGCGCGCCTGCTGGCCGCCACCGCGCGCGCACTCGCCGCGCTGCCCGCCGCCACCGCGCTGCCGTTCGAGATCCAAGTGACGCTGTTCAAGAAGTCGTGGGCCGAGCTGTTCGTGCTGGGTCTGTGCAAGTTGTCGCACGAGATGTCCCTGGGCACGCTGCTGCCGAGCATGGCGGGGCACCTGCACGCCGTGCTGCGGGAGCGCGCGTCCGGCGCCGCAGCCGCGCACGCACCGCTCGACGACCACGCGCCCGAGATCAGCGTGTGGGACTACACGGACGAGCGGATAGCGGAGATCATCTCGCTGCTCAGCCGCCTGCAGCAGCTCGTGGCCGCCATGGAGCAGCTGCGGGTCACCGACCGCGAGTACGCGCAGCTGCGGGCGCTCTGCTTCTTCTCGCCCGGTGCGTACTGA

Protein

MDGQDQLEMKFSSGSDVGGLELCIVCGDRASGRHYGAISCEGCKGFFKRSIRKKLGYQCRGTMNCEVTKHHRNRCQYCRLQKCLACGMRSDSVQHERKPIVDKNKSEPRDGLADRQAAYSKLLGLAGQAPSAQLTPKEEAGEAFGAVSPAPAINFALAAAVAFNKNSVSPYLNPGSPGDMEGARRQQIMLQTQLAKNLFKMGQFGAINEYLQSAYGAAPEPPPPADDARPDEMEVCSVLVPGGGALPLHAACESAARLLAATARALAALPAATALPFEIQVTLFKKSWAELFVLGLCKLSHEMSLGTLLPSMAGHLHAVLRERASGAAAAHAPLDDHAPEISVWDYTDERIAEIISLLSRLQQLVAAMEQLRVTDREYAQLRALCFFSPGAY

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

Q8T7Y2 H9JV00 A0A212FBY5 A0A194PR60 A0A0N1IPB7 A0A0T6BAY3 + More
A0A2J7PXR2 E9IPV5 A0A195BEJ0 A0A195F4C9 A0A151IW82 F4X1P1 A0A1D2N4S4 A0A195CBB6 A0A151WND9 A0A1E1X9H1

Pubmed

12039078 19121390 22118469 26354079 21282665 21719571 + More
27289101 28503490

EMBL

AF237663 AAL83722.1 BABH01037458 BABH01037459 BABH01037460 AGBW02009264 + More
OWR51227.1 KQ459597 KPI95234.1 KQ460466 KPJ14622.1 LJIG01002448 KRT84492.1 NEVH01020852 PNF21106.1 GL764626 EFZ17417.1 KQ976500 KYM83006.1 KQ981810 KYN35435.1 KQ980874 KYN12042.1 GL888544 EGI59632.1 LJIJ01000219 ODN00279.1 KQ978068 KYM97408.1 KQ982907 KYQ49384.1 GFAC01003281 JAT95907.1

Proteomes

UP000005204 UP000007151 UP000053268 UP000053240 UP000235965 UP000078540 + More
UP000078541 UP000078492 UP000007755 UP000094527 UP000078542 UP000075809

PRIDE

Q8T7Y2 H9JV00

Pfam

PF00104   Hormone_recep        + More
PF00105   zf-C4
PF00069   Pkinase
PF02991   Atg8

Interpro

IPR000536   Nucl_hrmn_rcpt_lig-bd        + More
IPR001628   Znf_hrmn_rcpt
IPR013088   Znf_NHR/GATA
IPR001723   Nuclear_hrmn_rcpt
IPR035500   NHR-like_dom_sf
IPR000719   Prot_kinase_dom
IPR011009   Kinase-like_dom_sf
IPR008271   Ser/Thr_kinase_AS
IPR027442   MAPKAPK_C
IPR017441   Protein_kinase_ATP_BS
IPR029071   Ubiquitin-like_domsf
IPR004241   Atg8-like

SUPFAM

SSF48508   SSF48508        + More
SSF56112   SSF56112
SSF54236   SSF54236

Gene 3D

1.10.565.10 3.30.50.10 4.10.1170.10

ProteinModelPortal

Q8T7Y2 H9JV00 A0A212FBY5 A0A194PR60 A0A0N1IPB7 A0A0T6BAY3 + More
A0A2J7PXR2 E9IPV5 A0A195BEJ0 A0A195F4C9 A0A151IW82 F4X1P1 A0A1D2N4S4 A0A195CBB6 A0A151WND9 A0A1E1X9H1

PDB

5UAN E-value=6.58746e-29, Score=317

KEGG

692572 no KO assigned | (RefSeq) Or; nuclear orphan receptor

GO

GO:0008270 GO:0003700 GO:0003707 GO:0043565 GO:0005634 GO:0005524 GO:0004672 GO:0006355 GO:0043401 GO:0003677 GO:0006281 GO:0006259

Subcellular location

Nucleus

Length:

392

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11364

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01389

outside

1 - 392

Pi

265.020153

Theta

174.935664

Tajima's D

1.816865

CLR

0.010477

CSRT

0.846557672116394

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics