HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.4	4.0	0.0027	0.16	1	23	284	307
2	2.9	0.8	2.8	1.7e+02	1	23	311	339
3	14.8	2.9	0.00046	0.027	1	23	413	435
4	1.5	3.4	7.6	4.5e+02	2	21	444	463
5	4.6	3.2	0.77	46	1	23	470	492
6	17.4	1.9	6.8e-05	0.0041	1	23	497	520
7	1.9	0.8	6	3.6e+02	3	12	526	535
8	5.7	0.2	0.37	22	3	23	636	657
9	20.2	1.6	8.9e-06	0.00053	1	23	666	688
10	18.0	0.3	4.6e-05	0.0028	1	23	694	716
11	18.0	4.1	4.4e-05	0.0026	1	23	722	745

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0027
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C++ +k+  +L++H+   H
  KWMTBOMO15654 284 YHCKICNYYYKTEFLLQSHMTEkH 307
                    89******************9888 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 2.8
                    EEETTTT.....EEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCg.....ksFkrksnLkrHirt.H 23 
                    y+C++C+     +    ++   +H+++ H
  KWMTBOMO15654 311 YVCTKCKevnfdRASAKQHFIWTHMQKgH 339
                    99*****8888888888888888888777 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 0.00046
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C + F+ +  +++H+++H
  KWMTBOMO15654 413 FKCELCYRGFRESTTYEKHMKKH 435
                    8*********************9 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 7.6
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    +C+ C+  F ++  L +H++
  KWMTBOMO15654 444 QCDMCKLYFLNQRKLYKHMS 463
                    7*****************96 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.77
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  C+ ++ ++ +  +H+r H
  KWMTBOMO15654 470 YSCRLCSFVCVNRGQAHAHYRWH 492
                    89*******************99 PP

  == domain 6  score: 17.4 bits;  conditional E-value: 6.8e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+Cp+C+k+Fk  s   +Hir  H
  KWMTBOMO15654 497 YPCPHCDKVFKKISTQLTHIRLkH 520
                    99*******************999 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 6
                    ETTTTEEESS CS
        zf-C2H2   3 CpdCgksFkr 12 
                    C+ Cg sF  
  KWMTBOMO15654 526 CNLCGHSFVG 535
                    ********75 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.37
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C++Cgk  ++  + ++H+ t H
  KWMTBOMO15654 636 CEVCGKFLSNDVQARKHYETeH 657
                    *****************99988 PP

  == domain 9  score: 20.2 bits;  conditional E-value: 8.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg + ++  nL++H+rtH
  KWMTBOMO15654 666 YMCDVCGHTTRQYANLMVHMRTH 688
                    89********************9 PP

  == domain 10  score: 18.0 bits;  conditional E-value: 4.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C+++F+ +sn  rHi +H
  KWMTBOMO15654 694 YECPQCDRRFSMPSNRDRHIAVH 716
                    99******************999 PP

  == domain 11  score: 18.0 bits;  conditional E-value: 4.4e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+++F+++   k Hi+t H
  KWMTBOMO15654 722 YQCHHCNRRFTQSNAVKLHIQTvH 745
                    9*********************99 PP