SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15654
Pre Gene Modal
BGIBMGA010686
Annotation
PREDICTED:_zinc_finger_protein_16-like_[Bombyx_mori]
Location
Bomo_Chr26(-):5323388-5335496      View in EpiBrowser
Transcription factor
zf-C2H2
Location in the cell
Nuclear   Reliability : 4.166
 

Sequence

CDS
ATGTTGGATTTAAAGGCCTGTTTTGTATGCTTTAGTGTTGAAACAAAGTTAATTAATTTGGATCGAGAGAAAGTGAGAAAAGATTTTAACTTGATTTCCGGTCTTCAGACTAAGCCTGGTGAAGGCCTTCCAGAATACTTGTGTGTGTATTGTTTGGCCTTTGTAAAACGCTCAATTAAGTTCCGAGAAAAATGTAAGAGAGCTCATTTTGCTTTACAAGAAATTCTGCAAAACTGTAAAGAGATAAAAACATATCACTTAACATCATTTGATGGAAAACGTCTGGGCATTGGACCCCAGCTATCCTATGTGGACCTAGACAAAACTCACTATGAACAAACAAAATTTCAATGGGTGAAACATAATCGGATCATTACAACTACAGGTGACATAATCCCAGTAGCTCACTGCAGTACACTGGCAAACCAAGACATATTTTTTGAAATAGAAGTAAAGAATAATGAATTATCTGAGAAAGTCAAAACAGAAGTTGTAGAAGAGCAATTTGTGAAAAGTTTTACAAAAAATGAAACATATGAAGACACAAATCTAGATGCCGGAGCTGATGATGATTATTATGACACAGAAGTTCAGAATGACAGTGATGGCCAGGAGACATTATTTCCTGTTATGTCTTGTGACATTAATAAGGATGAAAATGACAAGGCCGATGAGGAATACGCAAATGTATATCCTATATCAGTGAAAGAAGCAAAAGCAGCATTAGAGGTTCATAGGTTGTATAGCAGTAATGGGAAGCATATGTGTTCAATTTGTAGTAAAAGACATAACAGTGCCGAACGTCACAAAATACATTTGAGGATGCATGATAAGCACATTAGCGGCAAATATCATTGCAAAATATGTAATTATTATTACAAAACGGAATTTCTTCTACAGTCACACATGACTGAGAAACACATGTACAAATATGTTTGTACTAAATGTAAGGAGGTCAATTTTGATAGAGCTTCAGCAAAACAGCATTTCATATGGACTCACATGCAGAAAGGACACAAAAAAGATGATACTTGGTACAAAAACAGACCGACGTGGCTTAGTTCCAGAGGAGGCAAACGGATTAAAGGCTCAAAACACAGCAAAACTCCTGTGACTACCAGTAGAAAATTCTCAAAGCTTCCGGAAGACTTCCTAGTTTATTCTCCCATAAGTCATTTAGAACAATACCAGCTAGTACAGGACAGAAAAAAGACAAATAACTATTTGGATTCACTTTTCAAATGCGAACTGTGTTATAGAGGCTTTAGGGAATCCACTACATATGAAAAGCATATGAAGAAACATGATCCGACCGTATCTGGTAATGTTCAATGTGATATGTGCAAACTGTATTTCTTGAATCAAAGGAAACTCTACAAGCATATGAGTTGTACGCATCTATTCAAGTATTCATGTCGTTTGTGCAGTTTCGTATGCGTCAATAGGGGTCAAGCGCATGCGCATTACAGATGGCACAAAAATGTAACGTACCCCTGTCCGCACTGTGATAAAGTATTCAAAAAAATATCAACGCAGCTAACACACATACGACTGAAACACCCTTCGAACAACATCTGCAATCTGTGCGGGCACAGCTTCGTCGGTGAGAACGGACTGTACTGTCACAAGCAGATCGCGCACTCAGTAGAGGAGAGGGAACTGAGTCAGTCTGTGTCTGTGAACCCTTCGGACTCCATGTACTGTGCCGCCTGCGGGATACAGTTCCTCAACGAGGAAGCGTTCAACACGCATCTGGGCAGCTCCAATAAACACGCCACCGTCAATGAGTCGATACTGATGAAGCGCAAGCCGGGCGCGGCGCGGGGCGGGGGGCGCGGGCGGCCGGCGCGCACGCACGCGCTCGCCTCGCACATCGTCAACAACGGGCTCACCACCTCCACCAACTGTGAAGTCTGCGGCAAGTTCCTGTCGAACGACGTGCAGGCGCGCAAGCATTACGAGACCGAGCACCCCGGCACCGAGTACCTCAAGCGGTACATGTGCGACGTGTGCGGACACACCACGCGGCAATACGCGAACCTGATGGTCCACATGCGGACGCACACGAATGAGAAGCCGTACGAGTGTCCGCAGTGCGACCGGAGGTTCAGCATGCCCAGCAACCGAGACAGGCACATAGCGGTCCACACCGGCGAGAAGCGTTACCAGTGTCACCACTGCAACAGACGGTTCACGCAGAGCAACGCGGTGAAGCTTCACATCCAGACCGTTCACCTGAAGATCCCCTACGCGCCCTGGGACAAGAAGAACCGGAAGCGGCGCAAAGACGTGGAGCCTGCCCCCGCGCCCCCCGCGCTGCCCTGCCCCCCGCCGCAACACAAGGTGCTGCTGGAGGCGCAGGGAGACTACCTCAACGCCTACATCACGTACAACGATGTGTGA
Protein
MLDLKACFVCFSVETKLINLDREKVRKDFNLISGLQTKPGEGLPEYLCVYCLAFVKRSIKFREKCKRAHFALQEILQNCKEIKTYHLTSFDGKRLGIGPQLSYVDLDKTHYEQTKFQWVKHNRIITTTGDIIPVAHCSTLANQDIFFEIEVKNNELSEKVKTEVVEEQFVKSFTKNETYEDTNLDAGADDDYYDTEVQNDSDGQETLFPVMSCDINKDENDKADEEYANVYPISVKEAKAALEVHRLYSSNGKHMCSICSKRHNSAERHKIHLRMHDKHISGKYHCKICNYYYKTEFLLQSHMTEKHMYKYVCTKCKEVNFDRASAKQHFIWTHMQKGHKKDDTWYKNRPTWLSSRGGKRIKGSKHSKTPVTTSRKFSKLPEDFLVYSPISHLEQYQLVQDRKKTNNYLDSLFKCELCYRGFRESTTYEKHMKKHDPTVSGNVQCDMCKLYFLNQRKLYKHMSCTHLFKYSCRLCSFVCVNRGQAHAHYRWHKNVTYPCPHCDKVFKKISTQLTHIRLKHPSNNICNLCGHSFVGENGLYCHKQIAHSVEERELSQSVSVNPSDSMYCAACGIQFLNEEAFNTHLGSSNKHATVNESILMKRKPGAARGGGRGRPARTHALASHIVNNGLTTSTNCEVCGKFLSNDVQARKHYETEHPGTEYLKRYMCDVCGHTTRQYANLMVHMRTHTNEKPYECPQCDRRFSMPSNRDRHIAVHTGEKRYQCHHCNRRFTQSNAVKLHIQTVHLKIPYAPWDKKNRKRRKDVEPAPAPPALPCPPPQHKVLLEAQGDYLNAYITYNDV

Summary

Uniprot
H9JMD3   A0A3S2LJV4   A0A194QCN3   A0A0N1PJ21   A0A212EJ35   A0A2W1B689   + More
A0A2H1V5K9   A0A0N1PFS3   A0A2A4K955   A0A3Q1CB49   A0A3P9D8P1   A0A3B3IGA0  
Pubmed
19121390    26354079    22118469    28756777    25186727    17554307    + More
EMBL
BABH01040066    BABH01040067    RSAL01000087    RVE48251.1    KQ459193    KPJ03179.1    + More
KQ459941    KPJ19167.1    AGBW02014523    OWR41513.1    KZ150686    PZC70385.1    ODYU01000804    SOQ36135.1    KQ460882    KPJ11499.1    NWSH01000027    PCG80589.1   
Proteomes
UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000218220    + More
UP000257160    UP000265160    UP000001038   
PRIDE
H9JMD3   
Pfam
PF00096   zf-C2H2        + More
PF12171   zf-C2H2_jaz
PF07776   zf-AD
PF03820   Mtc
PF05485   THAP
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR022755   Znf_C2H2_jaz       
IPR012934   Znf_AD       
IPR004686   Mtc       
IPR038441   THAP_Znf_sf       
IPR006612   THAP_Znf       
IPR003656   Znf_BED       
IPR011017   TRASH_dom       
SUPFAM
SSF57667   SSF57667       
Gene 3D
3.30.40.180    
ProteinModelPortal
H9JMD3   A0A3S2LJV4   A0A194QCN3   A0A0N1PJ21   A0A212EJ35   A0A2W1B689   + More
A0A2H1V5K9   A0A0N1PFS3   A0A2A4K955   A0A3Q1CB49   A0A3P9D8P1   A0A3B3IGA0  
PDB
2I13     E-value=2.77705e-15,     Score=203

Ontologies

KEGG
105841786    no KO assigned | (RefSeq) zinc finger protein 16-like
GO
GO:0003676   GO:0046872   GO:0008270   GO:0005634   GO:0016020   GO:0015075   GO:0016021   GO:0003677   GO:0051287   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  
PANTHER
PTHR11153  

Topology

Length:
800
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000940000000000001
Exp number, first 60 AAs:
0.00032
Total prob of N-in:
0.00007
outside
1  -  800
 
 

Population Genetic Test Statistics

Pi
201.23133
Theta
160.398633
Tajima's D
0.910691
CLR
0.306974
CSRT
0.63756812159392
Interpretation
Uncertain
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