HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.6	0.7	3.4	2e+02	2	22	154	173
2	16.8	3.7	0.0001	0.0063	1	23	181	203
3	20.0	1.3	1.1e-05	0.00063	1	23	209	231
4	12.9	1.0	0.0018	0.11	1	23	237	259
5	13.8	3.3	0.00095	0.057	1	23	264	287
6	17.1	0.6	8.7e-05	0.0052	1	23	293	316

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 3.4
                    EETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                    +C +C+k+  +k + + H+ +
  KWMTBOMO15605 154 QCRICKKVV-SKGHSRDHYAI 173
                    7******98.66666666655 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 0.0001
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++CgksF+++s   +H+ tH
  KWMTBOMO15605 181 YICHICGKSFRQQSAHANHRFTH 203
                    89*************99999998 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+++ +++s+Lk H++tH
  KWMTBOMO15605 209 FKCKICPYRGRSSSLLKGHMKTH 231
                    8*********************9 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.0018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ +F +ksnL+rH  +H
  KWMTBOMO15605 237 YLCTECPARFLTKSNLNRHSLRH 259
                    66*****************9999 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 0.00095
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C+k F +k  L+rH+ + H
  KWMTBOMO15605 264 FKCDTCKKAFHSKLYLQRHYEVdH 287
                    8******************98888 PP

  == domain 6  score: 17.1 bits;  conditional E-value: 8.7e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ Cgk F  + +++rH+   H
  KWMTBOMO15605 293 YSCNLCGKAFGYRKQMRRHQIDvH 316
                    89*****************98766 PP