HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.0	1.1	0.0036	0.21	2	23	167	187
2	11.5	6.4	0.0053	0.32	1	23	194	216
3	17.4	1.6	6.9e-05	0.0041	1	23	222	244
4	12.7	1.8	0.0021	0.12	1	23	250	272
5	15.1	1.9	0.00037	0.022	1	23	277	300
6	20.1	1.0	9.5e-06	0.00057	1	23	306	329

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0036
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k+  +ks ++ H+ +H
  KWMTBOMO15609 167 TCKVCSKVV-TKSYYRDHMTMH 187
                    8********.*********999 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0053
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++CgksF+ +  + +H r+H
  KWMTBOMO15609 194 YVCDKCGKSFRLRCAYHNHNRRH 216
                    9*********************9 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 6.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC  C+++ + +++Lk+H+rtH
  KWMTBOMO15609 222 YKCQFCPYRGRYPELLKTHLRTH 244
                    9*********************9 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 0.0021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+ +F  ksnL++H+ +H
  KWMTBOMO15609 250 FMCTECPARFLFKSNLNTHMFKH 272
                    78******************999 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 0.00037
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC++C++ F +k +L+rH++  H
  KWMTBOMO15609 277 FKCDGCKRAFHSKLLLQRHYQAdH 300
                    8******************98777 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 9.5e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cgk F  +  +++H+r+ H
  KWMTBOMO15609 306 HVCNICGKAFGYRNAMMKHQRRvH 329
                    79********************99 PP