Gene

KWMTBOMO15605

Pre Gene Modal

BGIBMGA010719

Annotation

PREDICTED:_GDNF-inducible_zinc_finger_protein_1-like_[Papilio_machaon]

Location

Bomo_Chr26(-):3921000-3922088      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.028

CDS

ATGGCTGAAACTAAATCCATTACAAATTTTACTAAATGCAGAATATGTCTAAAAGAAGGCGGAATACCCATTTATGGACCTGACTGTTCTACTGATCTATCGTACGATGTGAGAACATTTGGAGACATCGACATCAGCGAAGATGATGAGTTTCCTAAGTATTTGTGCAGTGCTTGTTACAAACTTTTACAATGTGCGATACTATTTCGAAAGGCAGCTAAACAATCCGAAATACTCTTGAGTGAATCAATTTTGAAAAACAGTTCTGTGTCTGTATCGGAGTTCAGTTGTAGTACGGAATCAGATGAACCTCAGAATGATTATTGTGAAAACAATGCAAATAATGATAGACCCACTCAGTGGTCATCAGTGCAACAGTATTTCTTAGATTTAAGCAACTGTGATCTCGATAACATAAAGTTACCTGTTTGTCTCAATTTAGCCAGAGGTAAAAAAGTCCAATGTCGCATATGCAAGAAAGTTGTTAGCAAAGGACATAGTAGAGATCACTATGCTATCCACGACTCTACTTTGCCTAAATACATTTGTCACATTTGTGGAAAGTCATTTCGTCAACAAAGCGCACATGCTAACCACAGGTTTACTCACAGTACAGATTTCAAATTCAAATGCAAGATCTGTCCATACAGAGGACGCAGTTCAAGTCTGCTTAAAGGTCATATGAAGACGCATACTGGAGATTATCGTTATTTGTGTACAGAATGTCCTGCCAGATTCTTGACTAAAAGCAATTTGAACAGACATAGTCTTCGGCACAAAGAATCGGCGTTTAAATGTGATACTTGCAAAAAGGCTTTTCATTCAAAACTATACTTACAAAGACATTATGAAGTAGATCATTTAGGAGTGAAAAACTACAGCTGCAACTTGTGTGGCAAAGCTTTTGGCTACAGAAAACAAATGAGGAGACACCAAATAGATGTACACAAGCAAGAAAAGAAGTCGCCTGGCCGAATGCCTTCATATTTGAATAATAAATTAAATGCAGACATTTAA

Protein

MAETKSITNFTKCRICLKEGGIPIYGPDCSTDLSYDVRTFGDIDISEDDEFPKYLCSACYKLLQCAILFRKAAKQSEILLSESILKNSSVSVSEFSCSTESDEPQNDYCENNANNDRPTQWSSVQQYFLDLSNCDLDNIKLPVCLNLARGKKVQCRICKKVVSKGHSRDHYAIHDSTLPKYICHICGKSFRQQSAHANHRFTHSTDFKFKCKICPYRGRSSSLLKGHMKTHTGDYRYLCTECPARFLTKSNLNRHSLRHKESAFKCDTCKKAFHSKLYLQRHYEVDHLGVKNYSCNLCGKAFGYRKQMRRHQIDVHKQEKKSPGRMPSYLNNKLNADI

Uniprot

H9JMG6   A0A2A4JFN6   A0A1E1W6T3   A0A194RQM6   A0A0L7KN53   A0A2A4JER5   + More
A0A194PJV7   A0A212EYL8   S4PD46   A0A2H1WH54   A0A2H1W341   S4PGP2   A0A194RP61   A0A0L7K2S7   A0A194PK55   A0A1E1WIZ6   A0A0L7LRQ9   H9JMG1   A0A2H1VT86   A0A2A4JG74   S4PXU8   A0A2H1VBX8   A0A2H1VC51   A0A194PI86   H9J326   A0A1E1WBG0   A0A2H1VBV7  

Pubmed

19121390    26354079    26227816    22118469    23622113   

EMBL

BABH01016826    NWSH01001646    PCG70576.1    GDQN01008348    JAT82706.1    KQ459875    + More
KPJ19615.1    JTDY01008160    KOB64707.1    PCG70575.1    KQ459601    KPI93716.1    AGBW02011486    OWR46570.1    GAIX01003806    JAA88754.1    ODYU01008528    SOQ52212.1    ODYU01005946    SOQ47366.1    GAIX01003572    JAA88988.1    KPJ19633.1    JTDY01015286    KOB51959.1    KPI93702.1    GDQN01004061    JAT86993.1    JTDY01000233    KOB78143.1    BABH01016863    ODYU01004307    SOQ44037.1    PCG70574.1    GAIX01004413    JAA88147.1    ODYU01001731    SOQ38327.1    ODYU01001747    SOQ38366.1    KQ459603    KPI93027.1    BABH01037652    GDQN01006714    JAT84340.1    SOQ38328.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000037510    UP000053268    UP000007151    + More

PRIDE

H9JMG6    H9JMG1    H9J326   

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2
PF12171   zf-C2H2_jaz

Interpro

IPR012934   Znf_AD        + More
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR022755   Znf_C2H2_jaz       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9JMG6   A0A2A4JFN6   A0A1E1W6T3   A0A194RQM6   A0A0L7KN53   A0A2A4JER5   + More
A0A194PJV7   A0A212EYL8   S4PD46   A0A2H1WH54   A0A2H1W341   S4PGP2   A0A194RP61   A0A0L7K2S7   A0A194PK55   A0A1E1WIZ6   A0A0L7LRQ9   H9JMG1   A0A2H1VT86   A0A2A4JG74   S4PXU8   A0A2H1VBX8   A0A2H1VC51   A0A194PI86   H9J326   A0A1E1WBG0   A0A2H1VBV7  

PDB

5WJQ     E-value=4.97184e-18,     Score=223

KEGG

101741549    no KO assigned | (RefSeq) zinc finger protein 808-like

GO

GO:0008270   GO:0003676   GO:0005634   GO:0046872   GO:0030126   GO:0030117   GO:0006418   GO:0003707   GO:0006281   GO:0006259  

Length:

338

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00062

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.03100

outside

1  -  338

 

 

Pi

242.900877

Theta

204.555963

Tajima's D

0.654162

CLR

0.293695

CSRT

0.562021898905055

Interpretation

Uncertain