HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	21.0	1.4	5e-06	0.0003	1	23	284	306
2	15.6	1.5	0.00025	0.015	1	23	312	334
3	12.9	1.4	0.0019	0.11	1	23	340	362
4	24.3	0.8	4.6e-07	2.7e-05	1	23	368	390

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ Cg sF+++ +L++H r+H
  KWMTBOMO15602 284 HKCETCGSSFTSNASLQAHVRRH 306
                    79********************9 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 0.00025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg+ +  + +L+rH+++H
  KWMTBOMO15602 312 FVCSVCGYACVLRMELRRHMMRH 334
                    89********************9 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.0019
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC +C+++F +  + ++H r H
  KWMTBOMO15602 340 YKCRVCDRRFGDFGSRQKHERLH 362
                    9********************99 PP

  == domain 4  score: 24.3 bits;  conditional E-value: 4.6e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp CgksF+ ++ L++H+ tH
  KWMTBOMO15602 368 YECPQCGKSFTYSYVLTNHLLTH 390
                    99********************9 PP