Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO15479 | THR-like | 5.2e-34 | 1e-33 | 1 | + View |
HMM length of domain: 199 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 116.5 0.0 7.1e-37 1e-33 13 184 369 539 Alignments for each domain: == domain 1 score: 116.5 bits; conditional E-value: 7.1e-37 THR-like 13 elstqaiqevveFaKkipgFseleqeDQitLLkgaclevmllrlargfnpesdtvt....lndaelvtrdqlrslgrpglqgeliesvfkfaksla 104 +l++ ai+++++ aKki+ F++++ eDQ++LLkg+c+e+m+lr +++++ +++ ++ ++ + +d l+ ++ g++++s f +++ KWMTBOMO15479 369 NLTAVAIRRLIKIAKKISAFKNMCEEDQVALLKGGCIEMMVLRSTMTYDGQRNQWKiphcQEQFGRIGTDVLKLAK-----GDIYRSHEAFISTFC 459 67899******************************************************999999********876.....9************** PP THR-like 105 s.lnlddeemaLlvavallsPadrpgvsnegkveklqegvlealevylqkrhpasndpdlfakLlgkltelRslneehser 184 + ++ d++ + +l+a++l+ P rp + +++ v++ q++++ +l++yl++ +p ++++++f kL++k+ elR l+ee++ KWMTBOMO15479 460 ArWRTDESVILILSAILLFAP-HRPRLVHRDVVKLEQNSYYYLLRRYLESVYPGCEAKSTFLKLIQKVLELRKLAEEITDV 539 ********************9.*******************************************************9876 PP |
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