Gene

KWMTBOMO15479

Pre Gene Modal

BGIBMGA010782

Annotation

PREDICTED:_nuclear_hormone_receptor_family_member_nhr-8-like_[Amyelois_transitella]

Location

Bomo_Chr26(+):423871-436075      View in EpiBrowser

Transcription factor

THR-like

Location in the cell

Nuclear   Reliability : 4.217

CDS

ATGGACAATATTGGTGAAAATAAAACAGAAAACGTGAGCCAGAAAAAGGAACTACCACTTAATTTGCAAAAAATATGTTTAGTGTGCGGTGATAAAGCGTTAGGCTACAATTTTAATGCCATTTCGTGTGAGAGTTGCAAAGCGTTTTTCCGTCGAAATGCATTGGCTAGTAAAGAATTCAAATGTCCGTTTACGAACAATTGTGTTATAACCGTGGTCACAAGAAGATTCTGCCAGAAGTGTCGTTTAGAGAAATGTTTTGCCGTCGGTATGGTGAAAGAGTTTATAATGTCGGAGGAGGACAAAGCAGAAAAAAGGCGAAAAATAGAAGAGAACCGAGCCAGAAAAAGAAAGAGCGATTGTGATGAAGCTGTTTCTAGTTCAAAGAGTATGAAAAAAGATGATGAGAACTTGACAAGTAATTATCCACCAGAATCAATACAATATGATGTCTTAAACAGCACTACATGCAGTCCAAGCAGCACAGTCCAATCTCCACTCAACAATGACATGGAATCATCAATACAATCCCCTCCCATGTACAATTATGCTCCAATACCACCAGTTCAACCTGAATACAATATGAAGGTCTTCCCTATTGATGAGAAGCAGATAATGGATCAAGCATTGTACGAACAAAGGATGATGGATTCATACAAAATGTATGATAATGTTGAGAGTAACACATATATGGAGCCCCCCAAACAAAATAGTATAAGACAAATCTTAACGAATGGAGACACAGCAACCGCATTTAAAGAGACGAAACAACAACATGTCTGTGAAGAGATACCTTCCACCAGTACCGACCCTGATGTGAACAAAGCAAGGGATATCCTTCAAGATGTTGAAAGGATAGAACCAAACTCAATGGAGTCGATATTGTGTGAAGCAATCAAATTAGAATTCGAATCGTACGCTTCAGTGAACTCGTGTAGCGGCTCGTCCCGGGAACTCAATGAGGTAGAGCGCGCCAAGCTCAACGAACTGATCGTTGCCAACAAGGCCCTCAACGCGCCCATAGACGACGACATCTCGCAGCTCGTGGACTCCGCCAGCGCAGAGCCGGGCGGCAAGCACGACCCGCGCCTCATCCGGCTCGTCAACCTCACGGCGGTGGCCATACGCCGCCTCATCAAGATCGCCAAGAAGATTAGCGCCTTCAAGAACATGTGCGAGGAGGACCAGGTGGCTCTACTCAAGGGAGGCTGCATAGAGATGATGGTGCTTCGGAGCACAATGACCTACGATGGCCAGAGGAATCAGTGGAAGATCCCGCACTGCCAGGAGCAGTTCGGCCGCATCGGCACGGACGTGCTGAAGCTGGCCAAGGGCGACATCTACCGCTCGCACGAGGCCTTCATCAGCACGTTCTGCGCGCGCTGGCGCACCGACGAGAGCGTCATCCTCATCCTCTCCGCCATCCTGCTGTTCGCGCCGCACCGACCGCGCCTCGTGCACCGCGACGTCGTCAAGCTGGAGCAGAACTCGTACTACTATCTGCTGCGGCGCTACCTGGAGAGCGTGTACCCCGGCTGCGAGGCGAAGTCAACCTTCCTCAAGCTCATACAGAAAGTCCTCGAGCTTCGGAAGCTCGCCGAAGAGATAACCGACGTGTACCTCGACGTTAACCCTCTCGAACCGCTGCTGATGGAAATCTTCGATCTCAAGCATCACGGCGGGAGGGACTGA

Protein

MDNIGENKTENVSQKKELPLNLQKICLVCGDKALGYNFNAISCESCKAFFRRNALASKEFKCPFTNNCVITVVTRRFCQKCRLEKCFAVGMVKEFIMSEEDKAEKRRKIEENRARKRKSDCDEAVSSSKSMKKDDENLTSNYPPESIQYDVLNSTTCSPSSTVQSPLNNDMESSIQSPPMYNYAPIPPVQPEYNMKVFPIDEKQIMDQALYEQRMMDSYKMYDNVESNTYMEPPKQNSIRQILTNGDTATAFKETKQQHVCEEIPSTSTDPDVNKARDILQDVERIEPNSMESILCEAIKLEFESYASVNSCSGSSRELNEVERAKLNELIVANKALNAPIDDDISQLVDSASAEPGGKHDPRLIRLVNLTAVAIRRLIKIAKKISAFKNMCEEDQVALLKGGCIEMMVLRSTMTYDGQRNQWKIPHCQEQFGRIGTDVLKLAKGDIYRSHEAFISTFCARWRTDESVILILSAILLFAPHRPRLVHRDVVKLEQNSYYYLLRRYLESVYPGCEAKSTFLKLIQKVLELRKLAEEITDVYLDVNPLEPLLMEIFDLKHHGGRD

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

K7XCF6   K7WIS4   A0A1E1W371   A0A194PJP4   A0A3S2NF89   A0A0N0PB81   + More
A0A2A4K1A9   A0A2A4K1P1   A0A212FCI6   D6X2K2   A0A1W4XT57   A0A1Y1MAX3   N6UBW2   A0A1S5UZQ2   H2ER36   E9FSL8   A0A0P5HHW8   A0A0P5PYC4   A0A0P6BAW3   A0A0N8A932   A0A0P6GZI9   A0A0P5SCG2   A0A087UCI0   A0A0P5XKS8   A0A0N7ZPH5   A0A0P6G407   A0A0P6HE52   A0A2P6KYQ3   A0A0P5YLS3   A0A0N8DC17   A0A0A7CIW0   A0A2A3EDK0   A0A0P5RDP0   T1J1D7  

Pubmed

23523827    26354079    22118469    18362917    19820115    28004739    + More
23537049    21292972    25407996   

EMBL

JX680322    AFX60114.1    JX680323    AFX60115.1    GDQN01009662    JAT81392.1    + More
KQ459601    KPI93646.1    RSAL01000143    RVE46001.1    KQ461003    KPJ10028.1    NWSH01000274    PCG77849.1    PCG77848.1    AGBW02009182    OWR51456.1    KQ971372    EFA10671.1    GEZM01036088    JAV82982.1    APGK01029469    KB740735    KB632136    ENN79145.1    ERL89045.1    KX373873    AQN67832.1    JQ026113    AEX93434.1    GL732524    EFX89804.1    GDIQ01227814    JAK23911.1    GDIQ01121729    JAL29997.1    GDIP01019314    JAM84401.1    GDIP01170481    JAJ52921.1    GDIQ01038774    JAN55963.1    GDIQ01106247    JAL45479.1    KK119203    KFM75069.1    GDIQ01254601    GDIP01072851    LRGB01003123    JAJ97123.1    JAM30864.1    KZS04364.1    GDIP01225337    JAI98064.1    GDIQ01038775    JAN55962.1    GDIQ01021289    JAN73448.1    MWRG01003573    PRD31448.1    GDIP01056893    JAM46822.1    GDIP01048511    JAM55204.1    KJ664194    AID52831.1    KZ288271    PBC29807.1    GDIQ01102848    JAL48878.1    JH431783   

Proteomes

UP000053268    UP000283053    UP000053240    UP000218220    UP000007151    UP000007266    + More
UP000192223    UP000019118    UP000030742    UP000000305    UP000054359    UP000076858    UP000242457   

Pfam

PF00104   Hormone_recep        + More
PF00105   zf-C4

Interpro

IPR035500   NHR-like_dom_sf        + More
IPR001723   Nuclear_hrmn_rcpt       
IPR013088   Znf_NHR/GATA       
IPR000536   Nucl_hrmn_rcpt_lig-bd       
IPR001628   Znf_hrmn_rcpt       

SUPFAM

SSF48508   SSF48508       

Gene 3D

1.10.565.10     3.30.50.10    

ProteinModelPortal

K7XCF6   K7WIS4   A0A1E1W371   A0A194PJP4   A0A3S2NF89   A0A0N0PB81   + More
A0A2A4K1A9   A0A2A4K1P1   A0A212FCI6   D6X2K2   A0A1W4XT57   A0A1Y1MAX3   N6UBW2   A0A1S5UZQ2   H2ER36   E9FSL8   A0A0P5HHW8   A0A0P5PYC4   A0A0P6BAW3   A0A0N8A932   A0A0P6GZI9   A0A0P5SCG2   A0A087UCI0   A0A0P5XKS8   A0A0N7ZPH5   A0A0P6G407   A0A0P6HE52   A0A2P6KYQ3   A0A0P5YLS3   A0A0N8DC17   A0A0A7CIW0   A0A2A3EDK0   A0A0P5RDP0   T1J1D7  

PDB

1KB6     E-value=4.66649e-22,     Score=260

KEGG

101745160    K14035 nuclear receptor subfamily 1 group I | (RefSeq) nuclear hormone receptor HR96

GO

GO:0005634   GO:0043565   GO:0003707   GO:0003700   GO:0008270   GO:0003677   GO:0046872   GO:0006355   GO:0090575   GO:0045944   GO:0030154   GO:0000981   GO:0008134   GO:0000977   GO:0038023   GO:0030374   GO:0000976   GO:0007275   GO:0043401   GO:0006281   GO:0006259  

Subcellular location

Nucleus  

Length:

563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05335

Exp number, first 60 AAs:

0.00362

Total prob of N-in:

0.00285

outside

1  -  563

 

 

Pi

214.964291

Theta

164.238643

Tajima's D

0.892057

CLR

0.1564

CSRT

0.632568371581421

Interpretation

Uncertain