Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO15408	ESR-like	8.2e-50	1.8e-49	1	+ View
HMM length of domain: 272 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 168.8 0.3 1.6e-52 1.8e-49 2 218 177 378 Alignments for each domain: == domain 1 score: 168.8 bits; conditional E-value: 1.6e-52 ESR-like 2 rldrgklkvrgerqkykrkpesessetlqlltqsptkslellpaeklvsvlleaEPekv.yagedsskpdteasllssLtdLadrelvvvikWAkk 96 rldr vrg+rqky+r pe+ + ++ l + k++++ll++EPe ++++++ + +a++l L dL+drelv +i+WAk+ KWMTBOMO15408 177 RLDR----VRGGRQKYRRAPEQA------------QPRVQ-LDDIKVLEALLSYEPEPFaCSAAPPGVTEPAARTLALLADLYDRELVEIIGWAKQ 255 5555....555555555442221............11122.226799*******97626677888888999******************* PP ESR-like 97 iPGFsdLsleDQmkLlqssWmeilvlglvwRSlkh..egkLiFApdlvldeekkkvegllelfdallqlsqrfreLklereEyvclKallLlnsps 190 iPGF dL+l+DQm+Llqs+W+e+l+l +++RS++ + kL FA dl lde++++ g ++lf ++ +++r+++ reE v+lKal+L+ns + KWMTBOMO15408 256 IPGFTDLQLNDQMRLLQSTWAEMLSLMVAYRSMSSgaNLKLRFASDLTLDEQEARDIGATDLFLQVSGVVRRLERAGAVREECVLLKALVLANS-E 350 ******************************99899***************************************************.9 PP ESR-like 191 egledqekleelrdalieaLkkviaksr 218 l+++ +l+++r+++++aL++++a r KWMTBOMO15408 351 ARLDEHLTLRRFREQILQALNEAVAVLR 378 *********************98766 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO15408

ESR-like

8.2e-50

1.8e-49

+ View

						  HMM length of domain: 272 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	168.8	0.3	1.6e-52	1.8e-49	2	218	177	378

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 1.6e-52
       ESR-like   2 rldrgklkvrgerqkykrkpesessetlqlltqsptkslellpaeklvsvlleaEPekv.yagedsskpdteasllssLtdLadrelvvvikWAkk 96 
                    rldr    vrg+rqky+r pe+             +  ++ l + k++++ll++EPe   ++++++   + +a++l  L dL+drelv +i+WAk+
  KWMTBOMO15408 177 RLDR----VRGGRQKYRRAPEQA------------QPRVQ-LDDIKVLEALLSYEPEPFaCSAAPPGVTEPAARTLALLADLYDRELVEIIGWAKQ 255
                    5555....555555555442221............11122.226799*********97626677888888999*********************** PP

       ESR-like  97 iPGFsdLsleDQmkLlqssWmeilvlglvwRSlkh..egkLiFApdlvldeekkkvegllelfdallqlsqrfreLklereEyvclKallLlnsps 190
                    iPGF dL+l+DQm+Llqs+W+e+l+l +++RS++   + kL FA dl lde++++  g ++lf ++  +++r+++    reE v+lKal+L+ns +
  KWMTBOMO15408 256 IPGFTDLQLNDQMRLLQSTWAEMLSLMVAYRSMSSgaNLKLRFASDLTLDEQEARDIGATDLFLQVSGVVRRLERAGAVREECVLLKALVLANS-E 350
                    **********************************99899*******************************************************.9 PP

       ESR-like 191 egledqekleelrdalieaLkkviaksr 218
                      l+++ +l+++r+++++aL++++a  r
  KWMTBOMO15408 351 ARLDEHLTLRRFREQILQALNEAVAVLR 378
                    ***********************98766 PP