HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.1	1.7	0.0008	0.048	1	23	229	251
2	9.5	1.3	0.023	1.4	1	23	258	280
3	5.2	0.7	0.5	30	1	23	284	307
4	15.4	1.3	0.00031	0.018	1	20	314	333
5	13.5	3.1	0.0012	0.071	3	23	345	366
6	23.7	0.1	6.8e-07	4.1e-05	1	23	379	401
7	24.7	1.8	3.3e-07	2e-05	1	22	407	428
8	13.7	1.6	0.001	0.06	2	23	441	463
9	22.1	0.9	2.2e-06	0.00013	1	23	469	492
10	4.6	6.1	0.82	49	1	23	501	520
11	10.1	0.1	0.015	0.88	1	23	526	549

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 0.0008
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC dC k F  k ++ +H+ +H
  KWMTBOMO16070 229 YKCVDCLKGFDYKPSFYKHMERH 251
                    9*********************9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+++ ++   L +H + H
  KWMTBOMO16070 258 YVCDVCKQRTNSEKKLANHKKYH 280
                    9*******************998 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.5
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC++C+ +  +    k H+++ H
  KWMTBOMO16070 284 YKCTECDLTRVSYAAVKYHYNVfH 307
                    9******99999999999998888 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 0.00031
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y C++C+k Fk+   L++Hi
  KWMTBOMO16070 314 YNCTHCSKIFKSEITLRKHI 333
                    89*****************8 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 0.0012
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C++C++s+ +k+ Lk+H+++ H
  KWMTBOMO16070 345 CDHCHQSYVNKEVLKAHMMRrH 366
                    ********************99 PP

  == domain 6  score: 23.7 bits;  conditional E-value: 6.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C dCg+ F+++s+Lk+H  +H
  KWMTBOMO16070 379 FVCQDCGEAFRTPSQLKTHGIKH 401
                    89*****************9888 PP

  == domain 7  score: 24.7 bits;  conditional E-value: 3.3e-07
                    EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                    y+C +C+ksFk++++Lk+H+rt
  KWMTBOMO16070 407 YYCVECDKSFKSPYSLKTHLRT 428
                    89******************98 PP

  == domain 8  score: 13.7 bits;  conditional E-value: 0.001
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC +C k+F  k +L++H ++ H
  KWMTBOMO16070 441 KCLHCEKRFAVKRDLEQHTNRiH 463
                    8*******************999 PP

  == domain 9  score: 22.1 bits;  conditional E-value: 2.2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC+ C+k + ++s+Lk Hir+ H
  KWMTBOMO16070 469 FKCDRCDKAYVSSSSLKEHIRMtH 492
                    8********************999 PP

  == domain 10  score: 4.6 bits;  conditional E-value: 0.82
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C+k+F   + Lk+HirtH
  KWMTBOMO16070 501 YPCPTCHKVF---DILKTHIRTH 520
                    99********...8899999998 PP

  == domain 11  score: 10.1 bits;  conditional E-value: 0.015
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+  F++   L +H +  H
  KWMTBOMO16070 526 YRCGKCPAQFSQAGVLATHNKLvH 549
                    9******************88877 PP