HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.2	1.4	0.014	0.81	1	20	471	490
2	9.8	5.3	0.017	1	1	23	509	532
3	3.1	0.7	2.3	1.4e+02	1	23	537	561
4	6.4	0.1	0.21	13	2	23	583	607
5	14.4	0.4	0.0006	0.036	2	22	613	633
6	18.3	1.2	3.5e-05	0.0021	1	23	691	712
7	19.4	0.3	1.6e-05	0.00096	1	23	718	741
8	13.3	0.0	0.0014	0.085	2	20	764	782
9	11.3	0.8	0.006	0.36	2	23	797	820
10	7.2	6.0	0.12	7.2	1	21	827	847
11	9.9	1.2	0.017	0.99	3	21	857	875
12	18.4	1.5	3.3e-05	0.002	1	23	886	909

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.014
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    +kC+ C++ Fk + ++k+H 
  KWMTBOMO05404 471 FKCETCSMEFKYNIEMKKHS 490
                    8******************6 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C +C+ +Fk++  L +H+++ H
  KWMTBOMO05404 509 HRCQHCKVKFKSSLTLAAHLKRkH 532
                    79********************99 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 2.3
                    EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                    y C +C k+F+++ + k H++t  H
  KWMTBOMO05404 537 YFCLVCMKTFNTSLEAKIHRQTseH 561
                    78***********999999988666 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.21
                    EETTTT..EEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCg..ksFkrksnLkrHirt.H 23 
                    kCp+C+   + ++  +Lk Hir+ H
  KWMTBOMO05404 583 KCPYCTekVVLRNILMLKEHIRIvH 607
                    7*****9999************999 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 0.0006
                    EETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt 22 
                    kCp+Cg++F  + + +rHir+
  KWMTBOMO05404 613 KCPKCGMTFIFSQEVTRHIRS 633
                    8******************95 PP

  == domain 6  score: 18.3 bits;  conditional E-value: 3.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C+ksF  k +L++H+r H
  KWMTBOMO05404 691 YTCPLCPKSF-KKASLRQHLRQH 712
                    9*********.**********99 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 1.6e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg  F+r+  L++H++  H
  KWMTBOMO05404 718 FVCGTCGANFTRQTTLVNHQKNeH 741
                    89*******************988 PP

  == domain 8  score: 13.3 bits;  conditional E-value: 0.0014
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +C++Cg  F+++s L+rH 
  KWMTBOMO05404 764 ECEKCGNNFNSRSALTRHV 782
                    6*****************7 PP

  == domain 9  score: 11.3 bits;  conditional E-value: 0.006
                    EET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                    +Cp  +C+++ ++ s L rH+rtH
  KWMTBOMO05404 797 QCPheECTYVANTISKLARHRRTH 820
                    8999*******************9 PP

  == domain 10  score: 7.2 bits;  conditional E-value: 0.12
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++Cp C+ +  + s++krH+ 
  KWMTBOMO05404 827 HECPLCSFKTDQASHFKRHML 847
                    78*****************95 PP

  == domain 11  score: 9.9 bits;  conditional E-value: 0.017
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    Cp+C  ++ + +nL++H  
  KWMTBOMO05404 857 CPYCQFTCGSLENLRKHVL 875
                    *****************86 PP

  == domain 12  score: 18.4 bits;  conditional E-value: 3.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC++C+++ +   nL+ H+rt H
  KWMTBOMO05404 886 YKCHICNYPTNMATNLREHLRTvH 909
                    9*********************99 PP