HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	16.1	1.4	0.00018	0.011	2	23	164	185
2	12.5	0.5	0.0025	0.15	1	23	192	214
3	10.4	1.0	0.011	0.69	1	23	220	242
4	16.9	0.4	0.0001	0.0061	1	23	248	270
5	8.2	4.0	0.056	3.4	2	23	276	296
6	18.0	1.3	4.5e-05	0.0027	1	23	300	322
7	16.6	0.7	0.00012	0.0075	1	23	328	350
8	14.4	1.0	0.00062	0.037	1	23	356	378
9	12.1	4.9	0.0034	0.21	1	23	384	406
10	21.9	0.2	2.6e-06	0.00016	1	23	412	435
11	13.1	3.2	0.0016	0.096	1	19	441	459

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 0.00018
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C++ F++k  +++H+r+H
  KWMTBOMO11957 164 TCTFCSMEFSNKQGYNNHMRIH 185
                    7********************9 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC  C ++F+ + +L +H  +H
  KWMTBOMO11957 192 YKCAQCFQTFTENNDLISHKEIH 214
                    9******************9988 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+  F+++ ++  H  +H
  KWMTBOMO11957 220 FICNKCPVAFTNNCDYLIHKASH 242
                    78*****************9998 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 0.0001
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C +++++k + ++Hi tH
  KWMTBOMO11957 248 FTCEECEQTYSNKTSIVKHIETH 270
                    89********************9 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.056
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ C k+   ++nL++H+r H
  KWMTBOMO11957 276 KCHLCFKMI-KNYNLQSHLRNH 296
                    8********.**********99 PP

  == domain 6  score: 18.0 bits;  conditional E-value: 4.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +Cgk+  +ks+++ H+ +H
  KWMTBOMO11957 300 YECVECGKCLVNKSDYNLHMTMH 322
                    99******************999 PP

  == domain 7  score: 16.6 bits;  conditional E-value: 0.00012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk F ++ + ++H r+H
  KWMTBOMO11957 328 FQCLYCGKGFANNQQRNNHTRVH 350
                    89********************9 PP

  == domain 8  score: 14.4 bits;  conditional E-value: 0.00062
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C ++Fk+   L+rH  tH
  KWMTBOMO11957 356 YECKICFQKFKDTIGLQRHKVTH 378
                    99*****************9998 PP

  == domain 9  score: 12.1 bits;  conditional E-value: 0.0034
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk++ +  +L++H r+H
  KWMTBOMO11957 384 HQCNVCGKKYFHLQQLRTHSRIH 406
                    79*******************99 PP

  == domain 10  score: 21.9 bits;  conditional E-value: 2.6e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  Cgk+F++   Lk+Hi   H
  KWMTBOMO11957 412 YTCQMCGKRFPNAAGLKTHILYiH 435
                    9*******************9888 PP

  == domain 11  score: 13.1 bits;  conditional E-value: 0.0016
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ykC++C++sF  k +L+rH
  KWMTBOMO11957 441 YKCEYCNYSFIIKGQLVRH 459
                    9****************** PP