HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.5	4.2	0.00056	0.034	1	23	28	51
2	22.2	0.7	2.1e-06	0.00012	1	20	86	105
3	23.9	0.5	5.9e-07	3.5e-05	1	23	118	141
4	4.8	1.9	0.7	42	1	23	149	172
5	12.9	0.7	0.0019	0.11	1	23	179	201
6	12.3	0.2	0.0029	0.17	1	23	206	228
7	20.4	3.5	7.9e-06	0.00047	1	23	234	256
8	11.0	2.1	0.0073	0.44	3	23	262	282
9	5.6	1.4	0.4	24	1	23	288	315
10	16.8	1.0	0.00011	0.0066	1	23	321	343
11	5.9	0.6	0.3	18	2	23	350	373

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 0.00056
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   y C++Cgk+Fk k ++ +Hi   H
  KWMTBOMO15132 28 YCCKECGKKFKFKKSYLQHIELnH 51
                   89******************9888 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y+Cp+C+k F r+s+ +rH+
  KWMTBOMO15132  86 YVCPECNKEFVRRSHVTRHM 105
                    9******************9 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 5.9e-07
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+ +F+rk+nL +H+rt H
  KWMTBOMO15132 118 YPCEICNSKFTRKDNLIVHLRTqH 141
                    99********************99 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.7
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ C+   k+ s L++H    H
  KWMTBOMO15132 149 FFCKSCTFETKNFSRLVNHWLLkH 172
                    78*****************98877 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 0.0019
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +Cgks  ++  + +H+ +H
  KWMTBOMO15132 179 YECYHCGKSTGSRTAMAKHLEIH 201
                    99******************998 PP

  == domain 6  score: 12.3 bits;  conditional E-value: 0.0029
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cg+   + + ++rHi tH
  KWMTBOMO15132 206 YTCEVCGYATYTVEVMRRHILTH 228
                    9*********************9 PP

  == domain 7  score: 20.4 bits;  conditional E-value: 7.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C++s+  ks+L+rH+  H
  KWMTBOMO15132 234 YKCEHCNRSYIKKSQLQRHLDNH 256
                    9******************9988 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.0073
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cg++F++  +L  H ++H
  KWMTBOMO15132 262 CLKCGETFSTTCQLLDHKNVH 282
                    99****************999 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.4
                    EEET..TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCg...ksFkrksnLkrHirtH 23 
                    + C+  dC    k+F +  +L++H ++H
  KWMTBOMO15132 288 FACHyqDCRfskKPFLSEAQLQKHVKVH 315
                    779***********************99 PP

  == domain 10  score: 16.8 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk+F    +++rH++tH
  KWMTBOMO15132 321 YECEVCGKRFAVELHMRRHLSTH 343
                    99********************9 PP

  == domain 11  score: 5.9 bits;  conditional E-value: 0.3
                    EETTTT..EEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCg..ksFkrksnLkrHirtH 23 
                    +C +C   + + r + L++H r+H
  KWMTBOMO15132 350 RCMYCVsaRAYVRGEKLVKHVRVH 373
                    69999999***************6 PP