Gene

KWMTBOMO02774

Pre Gene Modal

BGIBMGA003704

Annotation

PREDICTED:_heat_shock_factor-d_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(-):10609209-10618440      View in EpiBrowser

Transcription factor

HSF

Location in the cell

Nuclear   Reliability : 3.878

CDS

ATGCGTTCCGTTGTCGAAATTGGGGCAAGTGTCCCTGCGTTTCTTGGGAAACTGTGGAAATTGGTTAATGATTCTGAAACAAATCAATTGATATCTTGGAGTCCGGGTGGAAAGACGTTTGTCATAAAAAATCAGGCAGATTTTGCTAGAGAACTTTTACCACTGTACTACAAACACAACAATATGGCAAGTTTTATAAGACAACTTAACATGTATGGATTTCATAAAATAACATCTGTTGAAAATGGCGGCTTGAGATATGAAAAAGACGAAATAGAGTTTTCGCATCCCTGTTTTATGAAAGGACATGCATATTTGTTGGAACATATTAAAAGAAAAATTGCAATTCCAAAATCTGTTGTAACAAGCAATGAAAGTGGTGAAAAAATTTTGTTAAAGCCTGAGCTTATGAATAAAGTTTTAGCTGATGTGAAACAAATGAAAGGAAAACAAGAAAGCCTCGATGCCAAATTTAGTGCAATGAAACAAGAGAATGAAGCACTATGGAGAGAAGTCGCTATTTTGCGGCAGAAGCATATCAAACAACAGCAAATAGTGAACAATCTCATTCAATTTTTGATGTCATTGGTGCAACCAGCAAGACCCCCTAATACTAACGGCAATAATGTTGGAGTCAAGAGACCATATCAGTTGATGATAAATAATGCCGCTCATAATTCTGCCACTGAAAGCTCTTATCCAGGAAGATTAAAAAATATTAAGCTAGACAAGGATCCTTTATTGGAGGAGATAAGTGATGAAAATTTGGAGGATGGACCTACAATACATGAATTGGCACATGATGACATACTGCAAAATGAATCCTCCCAAGATGCCATTGACCCTACATTCTTTGTAGCTACAGATTTGAATAATATCACTGATAATCAAAATGTAGCAAACCCATTATCCAATATTCAATACCATGTCACCATGGAAGACGGTGATGATATTGAATCAGGAGGCAATAAAATCGCATATCCTGTCAAGAGTAATAGACTACGATTCAATGAGGATTTGCCAGTAATTACTTCCCCATCTCCAACTCAGGGTAAACCTTCATCACCTTTAAACCAGAGTCCAGCGATTAATAATGTATTTACGATTACACCAAGCACTTCAAAGACCAAACCTCGTATCAAGACTACTAGTTCCAATACTAGAAGCTTAATATCTCCCAGCAGTTTCAACCCGTCTGCTGATTTTAAGCTTCCAGCTGAAATATTTGCAAGTGATGATTCTGTAAGTGATGTGGGGATACTGACTGCTGAGGAAACAGGAATAGAAAATATACTTCAGGATGTTGATGAGGACCCAATGGTATCTTCAACTAAAGACAAAATGTTGGGTGGTATTAACATAAAAGTAGAAAAAGTAAATGAAGGACTTAAACCTTCCAAAAAGTCTAAGAAGTCCAATAAAGACGACACACAGAACATTAACTTAGCGGCAATCAAGACTGAGCTTCAAGATGATTTTGATTGGAACAATATGACTCTTGCAACAGTGAACAATAATACGAACAACAAAATAAACAGATTCCAAACAAGGAATAGGAGAGATAACATCAGCAAAAATTGGGAAGAATACTCTTCTCATTTTGGAACAAATTCTAACAAGAATGACCTTGACGATCATTTAGACGCAATGCAATCGGACCTTGAATCGTTAAGAGAACTACTGCGAAGCGACAGTTATGCTTTGGATACTAATACTTTAATGGGGTTATTCGGATCGGACGATCCATTTTACGGCTTATCGTACAACCCCGCCGACGAAAGGGCGAAAACATCTAACAATGTTGCAAAGAAGCAGAAAGGTGATATATCGAATCTGTGCAGTGACGAGAACCGTGCCGAGCAGTTTATAGAAGACGATGTTGAAGGGAATCAGCTTATCTCGTATACAGGAAATATTCCAGACTTTGAGGATATAAATATGCCAGATTTAGAGAGTGAAAACTCTCAGGAAGGTTGTTTATCACCTGAAGTCAGCAGCTCGACGCTCAATACTCCTCAGGTGCAGGTCAGATCACCTTCCTTTAATCTCAAACCATGA

Protein

MRSVVEIGASVPAFLGKLWKLVNDSETNQLISWSPGGKTFVIKNQADFARELLPLYYKHNNMASFIRQLNMYGFHKITSVENGGLRYEKDEIEFSHPCFMKGHAYLLEHIKRKIAIPKSVVTSNESGEKILLKPELMNKVLADVKQMKGKQESLDAKFSAMKQENEALWREVAILRQKHIKQQQIVNNLIQFLMSLVQPARPPNTNGNNVGVKRPYQLMINNAAHNSATESSYPGRLKNIKLDKDPLLEEISDENLEDGPTIHELAHDDILQNESSQDAIDPTFFVATDLNNITDNQNVANPLSNIQYHVTMEDGDDIESGGNKIAYPVKSNRLRFNEDLPVITSPSPTQGKPSSPLNQSPAINNVFTITPSTSKTKPRIKTTSSNTRSLISPSSFNPSADFKLPAEIFASDDSVSDVGILTAEETGIENILQDVDEDPMVSSTKDKMLGGINIKVEKVNEGLKPSKKSKKSNKDDTQNINLAAIKTELQDDFDWNNMTLATVNNNTNNKINRFQTRNRRDNISKNWEEYSSHFGTNSNKNDLDDHLDAMQSDLESLRELLRSDSYALDTNTLMGLFGSDDPFYGLSYNPADERAKTSNNVAKKQKGDISNLCSDENRAEQFIEDDVEGNQLISYTGNIPDFEDINMPDLESENSQEGCLSPEVSSSTLNTPQVQVRSPSFNLKP

Similarity

Belongs to the HSF family.

Uniprot

F5HS62   F5HS60   F5HS61   F5HS63   A0A1B1XWT5   H9J2G7   + More
A0A2H1WLU5   B0M1K6   A0A2A4JZ31   A0A1B1XWU9   A0A1B1XWU3   A0A212ET71   A0A1B1XWU7   A0A1E1WJ53   A0A0E3N752   A0A1B1XWU4   A0A194QVM5   A0A194PPJ1   A0A1B1XWT9   A0A2A4JYD3   A0A2A4JXA7   A0A1E1WB44   A0A2A4JYS3   A0A1E1W5Y8  

Pubmed

19121390    19750550    22118469    26354079   

EMBL

AB623246    BAK26395.1    AB623244    BAK26393.1    AB623245    BAK26394.1    + More
AB623247    BAK26396.1    KU568475    ANW82405.1    BABH01007931    ODYU01009501    SOQ53987.1    AB354712    BAG07219.1    NWSH01000406    PCG76642.1    KU568477    ANW82407.1    KU568476    ANW82406.1    AGBW02012631    OWR44693.1    KU568478    ANW82408.1    GDQN01004127    JAT86927.1    KP307027    AKB11758.1    KU568474    ANW82404.1    KQ461181    KPJ07606.1    KQ459597    KPI94893.1    KU568473    ANW82403.1    PCG76644.1    PCG76641.1    GDQN01006868    JAT84186.1    PCG76643.1    GDQN01008674    JAT82380.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268   

PRIDE

F5HS62    F5HS60    F5HS61    F5HS63    H9J2G7   

Pfam

PF00447   HSF_DNA-bind        + More
PF06546   Vert_HS_TF

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR036390   WH_DNA-bd_sf       
IPR027725   HSF_fam       
IPR000232   HSF_DNA-bd       
IPR010542   Vert_HSTF_C       

SUPFAM

SSF46785   SSF46785       

Gene 3D

1.10.10.10    

ProteinModelPortal

F5HS62   F5HS60   F5HS61   F5HS63   A0A1B1XWT5   H9J2G7   + More
A0A2H1WLU5   B0M1K6   A0A2A4JZ31   A0A1B1XWU9   A0A1B1XWU3   A0A212ET71   A0A1B1XWU7   A0A1E1WJ53   A0A0E3N752   A0A1B1XWU4   A0A194QVM5   A0A194PPJ1   A0A1B1XWT9   A0A2A4JYD3   A0A2A4JXA7   A0A1E1WB44   A0A2A4JYS3   A0A1E1W5Y8  

PDB

1HKT     E-value=8.08864e-41,     Score=422

KEGG

100862835    K09414 heat shock transcription factor 1 | (RefSeq) HSFd, HSFa2, HSFb, HSFc; heat shock factor-d

GO

GO:0003700   GO:0043565   GO:0005634   GO:0006355   GO:0016021   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR10015  

Subcellular location

Nucleus  

Length:

685

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00208

Exp number, first 60 AAs:

0.0012

Total prob of N-in:

0.00029

outside

1  -  685

 

 

Pi

231.960672

Theta

196.378517

Tajima's D

0.602101

CLR

0.224386

CSRT

0.547772611369432

Interpretation

Uncertain