HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.6	0.1	0.09	5.4	1	20	40	58
2	7.1	6.0	0.13	8	1	23	71	94
3	5.7	0.6	0.36	21	3	23	103	124
4	22.1	0.7	2.2e-06	0.00013	1	20	129	148
5	22.9	0.7	1.3e-06	7.7e-05	1	23	161	184
6	2.3	4.0	4.2	2.5e+02	1	23	192	215
7	15.7	0.6	0.00024	0.015	1	23	222	244
8	12.2	0.2	0.0031	0.18	1	23	249	271
9	18.8	6.4	2.5e-05	0.0015	1	23	277	299
10	11.2	2.3	0.0065	0.39	3	23	305	325
11	4.7	0.5	0.75	45	1	23	331	358
12	16.7	1.0	0.00012	0.0069	1	23	364	386

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.09
                   EEETTTTEEESSHHHHHHHH CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHi 20
                   y+C++C+ks+ + ++ ++H 
  KWMTBOMO15130 40 YVCTICKKSC-DEDEWESHV 58
                   9********9.888888885 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.13
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   y C++Cgk+Fk k +  +Hi + H
  KWMTBOMO15130 71 YCCKECGKKFKFKKSHLQHIEMnH 94
                   89***********99999998877 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.36
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C++C+ ++++   Lk Hi t H
  KWMTBOMO15130 103 CTKCKVRCPNETVLKEHIETiH 124
                    ******************9999 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 2.2e-06
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y+Cp+C+k F r+s+ +rH+
  KWMTBOMO15130 129 YVCPECNKEFVRRSHVTRHM 148
                    9******************9 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 1.3e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+ +F+rk+nL +H+rt H
  KWMTBOMO15130 161 YPCEICKSKFTRKDNLIVHLRTqH 184
                    99********************99 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 4.2
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ C+   k+ s L++H    H
  KWMTBOMO15130 192 FFCKSCTFETKNFSRLVNHWHLkH 215
                    78*****************98777 PP

  == domain 7  score: 15.7 bits;  conditional E-value: 0.00024
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +Cgks +++  + +H+ +H
  KWMTBOMO15130 222 YECYHCGKSTSSRAAMAKHLEIH 244
                    99******************998 PP

  == domain 8  score: 12.2 bits;  conditional E-value: 0.0031
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cg+   + + ++rHi tH
  KWMTBOMO15130 249 YTCEVCGYATYTVEVMRRHILTH 271
                    9*********************9 PP

  == domain 9  score: 18.8 bits;  conditional E-value: 2.5e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C++s+ +ks+L+rH+ +H
  KWMTBOMO15130 277 HKCKHCNRSYIQKSQLQRHLDKH 299
                    79******************999 PP

  == domain 10  score: 11.2 bits;  conditional E-value: 0.0065
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +Cg++F+r  +L  H ++H
  KWMTBOMO15130 305 CLKCGETFSRTCQLLDHKNVH 325
                    99****************999 PP

  == domain 11  score: 4.7 bits;  conditional E-value: 0.75
                    EEET..TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCg...ksFkrksnLkrHirtH 23 
                    + C   dC    k+F +  +L++H ++H
  KWMTBOMO15130 331 FACRfqDCQfskKPFLSEAQLQKHVKVH 358
                    6688889999999999**********99 PP

  == domain 12  score: 16.7 bits;  conditional E-value: 0.00012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk+F    +++rH++tH
  KWMTBOMO15130 364 YECEVCGKRFAVELHMRRHLSTH 386
                    99********************9 PP