SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO15130
Pre Gene Modal
BGIBMGA004915
Annotation
PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.431
 

Sequence

CDS
ATGCCTCGTAAAGGTAAGAGAGTGGGTCGCCCCCCAGGGTCCAAGAATAAAAAACTCAAGTCAAGCAACACAGATCAACCAACAGATATCAAACAAGAAGTTAATTCTGGACAAGTTTATGTTTGTACAATATGTAAAAAGTCCTGTGACGAGGACGAATGGGAGAGTCACGTGGAAATCTGTCGTATGAGTTCAAATAATAAGCAACCATATTGCTGCAAAGAATGTGGGAAGAAATTTAAGTTCAAAAAGAGTCATCTTCAGCACATAGAAATGAACCACTCCACATTACCTAATAGTGTTGCTTGCACAAAATGTAAAGTACGGTGTCCAAATGAAACTGTTCTGAAGGAACACATAGAGACAATACATGAAAGAGCCTTATATGTATGTCCAGAATGCAATAAAGAGTTTGTAAGACGATCTCATGTAACTCGTCATATGACACAAAGTGGCTGTCATGGTCGTCAGTTAAATTTGTATCCTTGTGAAATTTGCAAGTCAAAATTCACAAGGAAAGATAATCTGATCGTACATCTTAGAACTCAGCACATACATAAAAGTGAAAAATACTTTTTCTGCAAGTCATGTACTTTTGAAACTAAAAACTTTTCTAGACTAGTAAATCATTGGCATTTAAAACATTCAGGGACACCAAATTATTATGAATGCTATCATTGCGGTAAATCTACCAGTTCCCGAGCAGCCATGGCCAAACATTTAGAAATACATGGAGAGAAAAACTACACCTGTGAAGTGTGTGGCTATGCTACATACACGGTAGAAGTAATGCGGCGTCACATCTTGACTCACGTTACGGATAAACCTCACAAATGCAAGCATTGTAACAGGTCGTACATACAGAAATCGCAGCTCCAGCGACATCTAGACAAGCACAATACGCAGAAAATGTGCCTTAAATGTGGAGAAACTTTCTCGAGAACATGCCAATTGTTAGACCACAAAAACGTACACAAAGGAAATAGCAAATTCGCGTGTCGTTTCCAAGATTGCCAGTTCTCTAAAAAACCATTTTTAAGTGAGGCTCAATTGCAGAAACACGTAAAAGTGCACCTCGAAGATAGACCATACGAGTGCGAAGTGTGCGGCAAGCGGTTCGCGGTGGAGCTGCACATGCGGCGGCACCTGTCCACGCACACACTGGAGCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGAGGCGAGAAGCTCGTAAAGCACGGTATCGAAGCGAATACGGTGAGAGTGAAGAAGTCGGAACTAGAGTGTATATTGAACATGTTGGACGCGGAGTCGGATCGGATCATGGACGGCTACGGGGGGACCGGCGTGTTGTACGGCGGCATGCAGGAACAAAAAGATGTCAACGAAAACAGTGACGAAAACATCTCTACGCAAAACGATAATGGACCTTTGATGACAGAAGAGGAGCTTTTGGACAACTTAGGGAAAATGCTGTTCAAACTGATTGATTCAGACACACTCGAGTGTTTCGGTTGGCCCGACGAGCCAGTTGATGTGGTGTTAGAGAAAGTGATCGAGCACTGCGGAGCTAAACCAGCGGATCGCACGATGTGGACGCGCATGCAACGGCTCCGAGAGAACACGAAGCATCTCTTCCTGTACGTGATAGACGACAAGAACATCGCCCGCATGCTGGACACGCACACCATAGACCAGATCGTCAAACATATACTCGCCCAAGTCAGCGACACCGACAAATGA
Protein
MPRKGKRVGRPPGSKNKKLKSSNTDQPTDIKQEVNSGQVYVCTICKKSCDEDEWESHVEICRMSSNNKQPYCCKECGKKFKFKKSHLQHIEMNHSTLPNSVACTKCKVRCPNETVLKEHIETIHERALYVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICKSKFTRKDNLIVHLRTQHIHKSEKYFFCKSCTFETKNFSRLVNHWHLKHSGTPNYYECYHCGKSTSSRAAMAKHLEIHGEKNYTCEVCGYATYTVEVMRRHILTHVTDKPHKCKHCNRSYIQKSQLQRHLDKHNTQKMCLKCGETFSRTCQLLDHKNVHKGNSKFACRFQDCQFSKKPFLSEAQLQKHVKVHLEDRPYECEVCGKRFAVELHMRRHLSTHTLERPRRCMYCVSARAYVRGEKLVKHGIEANTVRVKKSELECILNMLDAESDRIMDGYGGTGVLYGGMQEQKDVNENSDENISTQNDNGPLMTEEELLDNLGKMLFKLIDSDTLECFGWPDEPVDVVLEKVIEHCGAKPADRTMWTRMQRLRENTKHLFLYVIDDKNIARMLDTHTIDQIVKHILAQVSDTDK

Summary

EMBL
AGBW02012531    OWR44891.1    RSAL01000053    RVE50072.1    GDQN01001040    JAT90014.1    + More
KY938831    KY963168    ASA46472.1    ASA46488.1    KQ460045    KPJ18232.1    NWSH01003479    PCG66217.1    KQ459604    KPI92261.1    KK855503    PTY22859.1    GEZM01062258    GEZM01062257    JAV69918.1    NEVH01008206    PNF34720.1    KK852669    KDR18870.1    GGMR01006396    MBY19015.1    GEDC01004678    JAS32620.1    ABLF02040311    CAEY01000944    JH432192    KQ435863    KOX70410.1    KQ434905    KZC11225.1    KQ971354    EFA06069.1    KQ978957    KYN27232.1    KQ976725    KYM76563.1    KQ978501    KYM93574.1    KQ982813    KYQ50305.1    GBBI01003257    JAC15455.1    KQ981636    KYN38805.1    GBBI01003027    JAC15685.1    GL443059    EFN62642.1    ADTU01016095    GECZ01014666    JAS55103.1    GECU01036696    JAS71010.1    QOIP01000012    RLU16209.1    KZ288194    PBC33895.1    NCKU01011177    RWS00531.1    GBGD01000862    JAC88027.1    GFTR01007501    JAW08925.1    GL770938    EFZ09943.1    GBHO01025207    JAG18397.1    GBHO01025209    JAG18395.1    GDHC01013482    JAQ05147.1    GBRD01010584    JAG55240.1    GEBQ01007003    JAT32974.1    GBHO01015063    GBRD01010586    JAG28541.1    JAG55238.1    GFDF01007810    JAV06274.1    GEBQ01001305    JAT38672.1    GEBQ01003397    JAT36580.1    DS235786    EEB17019.1    GACK01003012    JAA62022.1    GACK01001961    JAA63073.1    GACK01003487    JAA61547.1    GACK01003486    JAA61548.1    GACK01007932    JAA57102.1    GFWV01011723    MAA36452.1    LBMM01001431    KMQ96330.1    GFPF01008154    MAA19300.1    GEDV01006190    JAP82367.1    GEDV01001273    JAP87284.1    GFWV01020891    MAA45619.1    ACPB03015537    KK107185    EZA55845.1    GEGO01001943    JAR93461.1    GEFM01006271    JAP69525.1    CVRI01000010    CRK88909.1    LJIG01009589    KRT82778.1    NNAY01002732    OXU20671.1    GDIP01089787    JAM13928.1    GDIP01010169    JAM93546.1    GDIP01187409    JAJ35993.1    LRGB01000007    KZS21962.1    PNF34722.1   
Pfam
PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
PF12235   FXMRP1_C_core
PF00013   KH_1
PF17904   KH_9
PF05641   Agenet
PF18336   Tudor_FRX1
PF01352   KRAB
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR041697   Znf-C2H2_11       
IPR017956   AT_hook_DNA-bd_motif       
IPR004087   KH_dom       
IPR022034   FXMRP1_C_core       
IPR016197   Chromo-like_dom_sf       
IPR041560   Tudor_FRX1       
IPR040148   FMR1       
IPR040472   FMRP_KH0       
IPR004088   KH_dom_type_1       
IPR008395   Agenet-like_dom       
IPR036612   KH_dom_type_1_sf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
SUPFAM
SSF57667   SSF57667        + More
SSF54791   SSF54791       
SSF54160   SSF54160       
SSF109640   SSF109640       
Gene 3D
PDB
5V3M     E-value=8.21736e-29,     Score=318

Ontologies

Topology

Length:
579
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00381
outside
1  -  579
 
 

Population Genetic Test Statistics

Pi
209.297113
Theta
187.780344
Tajima's D
0.414526
CLR
0.179643
CSRT
0.488225588720564
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号