Gene

KWMTBOMO15130

Pre Gene Modal

BGIBMGA004915

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr25(+):5581555-5595029      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.431

CDS

ATGCCTCGTAAAGGTAAGAGAGTGGGTCGCCCCCCAGGGTCCAAGAATAAAAAACTCAAGTCAAGCAACACAGATCAACCAACAGATATCAAACAAGAAGTTAATTCTGGACAAGTTTATGTTTGTACAATATGTAAAAAGTCCTGTGACGAGGACGAATGGGAGAGTCACGTGGAAATCTGTCGTATGAGTTCAAATAATAAGCAACCATATTGCTGCAAAGAATGTGGGAAGAAATTTAAGTTCAAAAAGAGTCATCTTCAGCACATAGAAATGAACCACTCCACATTACCTAATAGTGTTGCTTGCACAAAATGTAAAGTACGGTGTCCAAATGAAACTGTTCTGAAGGAACACATAGAGACAATACATGAAAGAGCCTTATATGTATGTCCAGAATGCAATAAAGAGTTTGTAAGACGATCTCATGTAACTCGTCATATGACACAAAGTGGCTGTCATGGTCGTCAGTTAAATTTGTATCCTTGTGAAATTTGCAAGTCAAAATTCACAAGGAAAGATAATCTGATCGTACATCTTAGAACTCAGCACATACATAAAAGTGAAAAATACTTTTTCTGCAAGTCATGTACTTTTGAAACTAAAAACTTTTCTAGACTAGTAAATCATTGGCATTTAAAACATTCAGGGACACCAAATTATTATGAATGCTATCATTGCGGTAAATCTACCAGTTCCCGAGCAGCCATGGCCAAACATTTAGAAATACATGGAGAGAAAAACTACACCTGTGAAGTGTGTGGCTATGCTACATACACGGTAGAAGTAATGCGGCGTCACATCTTGACTCACGTTACGGATAAACCTCACAAATGCAAGCATTGTAACAGGTCGTACATACAGAAATCGCAGCTCCAGCGACATCTAGACAAGCACAATACGCAGAAAATGTGCCTTAAATGTGGAGAAACTTTCTCGAGAACATGCCAATTGTTAGACCACAAAAACGTACACAAAGGAAATAGCAAATTCGCGTGTCGTTTCCAAGATTGCCAGTTCTCTAAAAAACCATTTTTAAGTGAGGCTCAATTGCAGAAACACGTAAAAGTGCACCTCGAAGATAGACCATACGAGTGCGAAGTGTGCGGCAAGCGGTTCGCGGTGGAGCTGCACATGCGGCGGCACCTGTCCACGCACACACTGGAGCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGAGGCGAGAAGCTCGTAAAGCACGGTATCGAAGCGAATACGGTGAGAGTGAAGAAGTCGGAACTAGAGTGTATATTGAACATGTTGGACGCGGAGTCGGATCGGATCATGGACGGCTACGGGGGGACCGGCGTGTTGTACGGCGGCATGCAGGAACAAAAAGATGTCAACGAAAACAGTGACGAAAACATCTCTACGCAAAACGATAATGGACCTTTGATGACAGAAGAGGAGCTTTTGGACAACTTAGGGAAAATGCTGTTCAAACTGATTGATTCAGACACACTCGAGTGTTTCGGTTGGCCCGACGAGCCAGTTGATGTGGTGTTAGAGAAAGTGATCGAGCACTGCGGAGCTAAACCAGCGGATCGCACGATGTGGACGCGCATGCAACGGCTCCGAGAGAACACGAAGCATCTCTTCCTGTACGTGATAGACGACAAGAACATCGCCCGCATGCTGGACACGCACACCATAGACCAGATCGTCAAACATATACTCGCCCAAGTCAGCGACACCGACAAATGA

Protein

MPRKGKRVGRPPGSKNKKLKSSNTDQPTDIKQEVNSGQVYVCTICKKSCDEDEWESHVEICRMSSNNKQPYCCKECGKKFKFKKSHLQHIEMNHSTLPNSVACTKCKVRCPNETVLKEHIETIHERALYVCPECNKEFVRRSHVTRHMTQSGCHGRQLNLYPCEICKSKFTRKDNLIVHLRTQHIHKSEKYFFCKSCTFETKNFSRLVNHWHLKHSGTPNYYECYHCGKSTSSRAAMAKHLEIHGEKNYTCEVCGYATYTVEVMRRHILTHVTDKPHKCKHCNRSYIQKSQLQRHLDKHNTQKMCLKCGETFSRTCQLLDHKNVHKGNSKFACRFQDCQFSKKPFLSEAQLQKHVKVHLEDRPYECEVCGKRFAVELHMRRHLSTHTLERPRRCMYCVSARAYVRGEKLVKHGIEANTVRVKKSELECILNMLDAESDRIMDGYGGTGVLYGGMQEQKDVNENSDENISTQNDNGPLMTEEELLDNLGKMLFKLIDSDTLECFGWPDEPVDVVLEKVIEHCGAKPADRTMWTRMQRLRENTKHLFLYVIDDKNIARMLDTHTIDQIVKHILAQVSDTDK

Uniprot

A0A212ETW2   A0A3S2M3F7   A0A1E1WSR9   A0A1Z2RRK4   A0A194RL13   A0A2A4J228   + More
A0A194PFU9   A0A2R7WTH6   A0A1Y1LAK7   A0A2J7R1K9   A0A067R6F8   A0A2S2NPB1   A0A1B6E3W8   J9K9X6   T1L2B5   T1JG23   A0A0M8ZST6   A0A154PH90   D6WQI5   A0A195EH84   A0A195AWD9   A0A195BY37   A0A151WRK3   A0A023F2E3   A0A195FDR5   A0A023F2W5   E2AV88   A0A158NHW9   A0A1B6FYG6   A0A1B6H8M3   A0A3L8D7D9   A0A2A3EQ55   A0A087ZZQ7   A0A3S3NRR0   A0A069DWF7   A0A224X9C5   E9JB51   A0A0A9XCE0   A0A0A9XMQ0   A0A146LDP0   A0A0K8SR27   A0A1B6MAT6   A0A0A9YAA1   A0A1L8DIW0   A0A1B6MRV8   A0A1B6MKU3   E0VUG3   L7MDX5   L7MIJ3   L7MCM5   L7ME95   L7LZT7   A0A293M6D1   A0A0J7NVA9   A0A224YZW0   A0A131YTT8   A0A131Z7I7   A0A293MZR4   T1I0X7   A0A026WIK1   A0A147BRV8   A0A131XTJ0   A0A1J1HLK0   A0A0T6B5W6   A0A232EQQ1   A0A0P5W8G1   A0A0P6BU37   A0A0N8A316   A0A162T6X3   A0A2J7R1L8   A0A2Y9RBM8   A0A2Y9R015  

Pubmed

22118469    28605547    26354079    28004739    24845553    18362917    + More
19820115    25474469    20798317    21347285    30249741    26334808    21282665    25401762    26823975    20566863    25576852    28797301    26830274    24508170    29652888    28648823   

EMBL

AGBW02012531    OWR44891.1    RSAL01000053    RVE50072.1    GDQN01001040    JAT90014.1    + More
KY938831    KY963168    ASA46472.1    ASA46488.1    KQ460045    KPJ18232.1    NWSH01003479    PCG66217.1    KQ459604    KPI92261.1    KK855503    PTY22859.1    GEZM01062258    GEZM01062257    JAV69918.1    NEVH01008206    PNF34720.1    KK852669    KDR18870.1    GGMR01006396    MBY19015.1    GEDC01004678    JAS32620.1    ABLF02040311    CAEY01000944    JH432192    KQ435863    KOX70410.1    KQ434905    KZC11225.1    KQ971354    EFA06069.1    KQ978957    KYN27232.1    KQ976725    KYM76563.1    KQ978501    KYM93574.1    KQ982813    KYQ50305.1    GBBI01003257    JAC15455.1    KQ981636    KYN38805.1    GBBI01003027    JAC15685.1    GL443059    EFN62642.1    ADTU01016095    GECZ01014666    JAS55103.1    GECU01036696    JAS71010.1    QOIP01000012    RLU16209.1    KZ288194    PBC33895.1    NCKU01011177    RWS00531.1    GBGD01000862    JAC88027.1    GFTR01007501    JAW08925.1    GL770938    EFZ09943.1    GBHO01025207    JAG18397.1    GBHO01025209    JAG18395.1    GDHC01013482    JAQ05147.1    GBRD01010584    JAG55240.1    GEBQ01007003    JAT32974.1    GBHO01015063    GBRD01010586    JAG28541.1    JAG55238.1    GFDF01007810    JAV06274.1    GEBQ01001305    JAT38672.1    GEBQ01003397    JAT36580.1    DS235786    EEB17019.1    GACK01003012    JAA62022.1    GACK01001961    JAA63073.1    GACK01003487    JAA61547.1    GACK01003486    JAA61548.1    GACK01007932    JAA57102.1    GFWV01011723    MAA36452.1    LBMM01001431    KMQ96330.1    GFPF01008154    MAA19300.1    GEDV01006190    JAP82367.1    GEDV01001273    JAP87284.1    GFWV01020891    MAA45619.1    ACPB03015537    KK107185    EZA55845.1    GEGO01001943    JAR93461.1    GEFM01006271    JAP69525.1    CVRI01000010    CRK88909.1    LJIG01009589    KRT82778.1    NNAY01002732    OXU20671.1    GDIP01089787    JAM13928.1    GDIP01010169    JAM93546.1    GDIP01187409    JAJ35993.1    LRGB01000007    KZS21962.1    PNF34722.1   

Proteomes

UP000007151    UP000283053    UP000053240    UP000218220    UP000053268    UP000235965    + More
UP000027135    UP000007819    UP000015104    UP000053105    UP000076502    UP000007266    UP000078492    UP000078540    UP000078542    UP000075809    UP000078541    UP000000311    UP000005205    UP000279307    UP000242457    UP000005203    UP000285301    UP000009046    UP000036403    UP000015103    UP000053097    UP000183832    UP000215335    UP000076858    UP000248480   

Pfam

PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
PF12235   FXMRP1_C_core
PF00013   KH_1
PF17904   KH_9
PF05641   Agenet
PF18336   Tudor_FRX1
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR041697   Znf-C2H2_11       
IPR017956   AT_hook_DNA-bd_motif       
IPR004087   KH_dom       
IPR022034   FXMRP1_C_core       
IPR016197   Chromo-like_dom_sf       
IPR041560   Tudor_FRX1       
IPR040148   FMR1       
IPR040472   FMRP_KH0       
IPR004088   KH_dom_type_1       
IPR008395   Agenet-like_dom       
IPR036612   KH_dom_type_1_sf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF54791   SSF54791       
SSF54160   SSF54160       
SSF109640   SSF109640       

Gene 3D

3.30.1370.10    

CDD

cd07765  KRAB_A-box

ProteinModelPortal

A0A212ETW2   A0A3S2M3F7   A0A1E1WSR9   A0A1Z2RRK4   A0A194RL13   A0A2A4J228   + More
A0A194PFU9   A0A2R7WTH6   A0A1Y1LAK7   A0A2J7R1K9   A0A067R6F8   A0A2S2NPB1   A0A1B6E3W8   J9K9X6   T1L2B5   T1JG23   A0A0M8ZST6   A0A154PH90   D6WQI5   A0A195EH84   A0A195AWD9   A0A195BY37   A0A151WRK3   A0A023F2E3   A0A195FDR5   A0A023F2W5   E2AV88   A0A158NHW9   A0A1B6FYG6   A0A1B6H8M3   A0A3L8D7D9   A0A2A3EQ55   A0A087ZZQ7   A0A3S3NRR0   A0A069DWF7   A0A224X9C5   E9JB51   A0A0A9XCE0   A0A0A9XMQ0   A0A146LDP0   A0A0K8SR27   A0A1B6MAT6   A0A0A9YAA1   A0A1L8DIW0   A0A1B6MRV8   A0A1B6MKU3   E0VUG3   L7MDX5   L7MIJ3   L7MCM5   L7ME95   L7LZT7   A0A293M6D1   A0A0J7NVA9   A0A224YZW0   A0A131YTT8   A0A131Z7I7   A0A293MZR4   T1I0X7   A0A026WIK1   A0A147BRV8   A0A131XTJ0   A0A1J1HLK0   A0A0T6B5W6   A0A232EQQ1   A0A0P5W8G1   A0A0P6BU37   A0A0N8A316   A0A162T6X3   A0A2J7R1L8   A0A2Y9RBM8   A0A2Y9R015  

PDB

5V3M     E-value=8.21736e-29,     Score=318

KEGG

101746097    no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF57.1-like

GO

GO:0003676   GO:0003677   GO:0016021   GO:0006417   GO:0003729   GO:0006355   GO:0046872   GO:0046983   GO:0005525   GO:0000166   GO:0008408   GO:0005112   GO:0015930  

PANTHER

PTHR10603  

Length:

579

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00381

outside

1  -  579

 

 

Pi

209.297113

Theta

187.780344

Tajima's D

0.414526

CLR

0.179643

CSRT

0.488225588720564

Interpretation

Uncertain