HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.2	0.2	1.1	63	3	23	19	39
2	7.9	3.0	0.073	4.4	2	19	45	62
3	9.7	0.3	0.02	1.2	1	23	72	94
4	12.5	0.8	0.0025	0.15	1	23	100	122
5	14.0	3.5	0.00082	0.049	2	23	129	151
6	4.5	8.8	0.89	53	1	23	156	179

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 1.1
                   ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirt.H 23
                   C++C+k+  +k +Lk H  + H
  KWMTBOMO14869 19 CDVCKKRM-QKASLKLHVAVkH 39
                   99999999.9999999998877 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.073
                   EETTTTEEESSHHHHHHH CS
        zf-C2H2  2 kCpdCgksFkrksnLkrH 19
                   +C++Cgk+F +k  L  H
  KWMTBOMO14869 45 VCEHCGKRFGNKTRLGEH 62
                   6********999988777 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.02
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++C     +   L++H r+H
  KWMTBOMO14869 72 FRCGYCEFQSASVLALQNHERRH 94
                   89********************9 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.0025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cg +F   ++L +H+ +H
  KWMTBOMO14869 100 FVCEACGAKFHAAYLLAQHRHSH 122
                    89******************999 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 0.00082
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C+ sFk++ +L +H +t H
  KWMTBOMO14869 129 RCELCPASFKSNNSLHVHKQTcH 151
                    7*******************999 PP

  == domain 6  score: 4.5 bits;  conditional E-value: 0.89
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C++s++ ++  ++H+r  H
  KWMTBOMO14869 156 YKCSMCSRSYSCRHYAVKHLRHvH 179
                    9*******************9988 PP