Gene

KWMTBOMO14869

Pre Gene Modal

BGIBMGA012187

Annotation

PREDICTED:_oocyte_zinc_finger_protein_XlCOF26-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr24(-):16741626-16746405      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.255

CDS

ATGGCCAAGAAGAAAAAACGAAAAGTATCTGATTCTAGTCGCGAATTGATTGATTGCGATGTGTGCAAGAAAAGAATGCAAAAGGCTAGTCTGAAACTCCACGTGGCCGTGAAGCACGCCGGGCTGGGACCGGTGTGTGAGCACTGCGGCAAACGTTTCGGCAACAAGACGCGTCTGGGCGAGCACTGCCGCGCCAAGCACGGCCACGAGAAGTTCCGGTGCGGGTACTGCGAGTTCCAGAGCGCCTCCGTGCTGGCGCTTCAGAATCACGAGAGGCGCCATCGCGGGGAGAAGCCGTTCGTGTGTGAAGCGTGCGGGGCGAAGTTCCACGCGGCCTACCTCCTGGCCCAGCACCGGCACTCGCACAGGACCCAGAAGCTGGTCAGGTGCGAACTGTGTCCGGCCTCATTCAAATCAAACAACAGTTTGCACGTGCACAAACAGACCTGCCACAGCAACGCCATATACAAATGCAGCATGTGCTCCAGATCCTACAGCTGTCGTCACTACGCTGTCAAACATCTCCGGCACGTGCATCAGTACAGCGGGCCGGCGCCTCCTCTCACGGCAATAGACGCTCAGAATATTATATGA

Protein

MAKKKKRKVSDSSRELIDCDVCKKRMQKASLKLHVAVKHAGLGPVCEHCGKRFGNKTRLGEHCRAKHGHEKFRCGYCEFQSASVLALQNHERRHRGEKPFVCEACGAKFHAAYLLAQHRHSHRTQKLVRCELCPASFKSNNSLHVHKQTCHSNAIYKCSMCSRSYSCRHYAVKHLRHVHQYSGPAPPLTAIDAQNII

Uniprot

A0A1E1WFF8   A0A2A4IS91   A0A212F2R2   A0A2A4K6V4   A0A0N1PHJ4   H9JRL6   + More
A0A2H1W320   A0A0N1PI16   A0A212F9Y0   A0A212F2P5   A0A212ENY9   A0A0N1I3X2   A0A2H1WGD0   A0A0N0PED6   A0A0L8FHE3   A0A1E1WQF5   A0A1E1W0H9   A0A1B6DBX7   X1WX70   A0A212ENW2   A0A212F9X8   A0A2D0PY42   A0A2D0PWR4   A0A146RHM9   A0A3M0K4E7   A0A218UIH2   A0A2H1VGT5   A0A3Q2Z196   C4A0C2   A0A3Q2NUF1   Q7TMC9   A0A146PSZ5   A0A146SE69   A0A146SZ08   H0ZAX8   A0A0L8HKK1   A0A0A0AKP3   A0A2A4K7J9   A0A146QIG7   A0A146P127   A0A091EJR4   A0A146QTT3   A0A0L8H8X3   A0A146NZF9   A0A087TLD1   A0A2I4AJE8   A0A1B6CNT7   W5NI82   A0A3P8QTN8   P70590   A0A146MKP3   E9Q1L8   G3H7J7   A0A0L8FH52   A0A146NYT6   A0A0L8GE42   C3ZPS7   I3LQQ7   A0A0L8G597   A0A0A0AEJ0   A0A2P6KHB1   A0A1B6DR10   A0A3Q4I9Z9   A0A0L8GYY8   A0A2D4HMS7   C3ZDJ8   A0A0L8HUF8   A0A0L8H1A0   A0A2F0BB22   A0A1A8GI41   A0A2Y9ML31   A0A3Q0SI67   A0A3P8QSK4   A0A2J7PYH6   A0A341CZC3   A0A2U4C4Y0   A0A3Q0S875   A0A1A8P756   A0A340WQT6   A0A1A8Q424   A0A1A8FZM1   A0A3Q3DVR0   E9QJ51   V4ANB0   A0A2I4AJI5   A0A1W4Y6S8   A0A1S3WTG2   Q7M6W9   A0A0L8I7V0   A0A0L8FTV1   Q6AYY1  

Pubmed

22118469    26354079    19121390    18563158    14563677    15489334    + More
19468303    20360741    9655926    21804562    30723633    25186727    23594743    23254933    15057822    15632090   

EMBL

GDQN01005314    JAT85740.1    NWSH01008233    PCG62645.1    AGBW02010693    OWR48019.1    + More
NWSH01000116    PCG79390.1    KQ458863    KPJ04720.1    BABH01031730    ODYU01006018    SOQ47495.1    KQ459988    KPJ18791.1    AGBW02009549    OWR50541.1    OWR48018.1    AGBW02013599    OWR43194.1    KPJ04721.1    ODYU01008483    SOQ52123.1    KPJ18790.1    KQ432245    KOF62831.1    GDQN01002003    JAT89051.1    GDQN01010554    JAT80500.1    GEDC01014156    JAS23142.1    ABLF02038592    OWR43192.1    OWR50542.1    GCES01118384    JAQ67938.1    QRBI01000119    RMC08042.1    MUZQ01000291    OWK53381.1    ODYU01002490    SOQ40036.1    GG666797    EEN41762.1    CT030194    BC055337    BC055756    BK001637    AAH55337.1    DAA01862.1    GCES01139239    JAQ47083.1    GCES01107403    JAQ78919.1    GCES01100642    JAQ85680.1    ABQF01122833    KQ417917    KOF89778.1    KL871955    KGL94113.1    NWSH01000062    PCG80049.1    GCES01130796    JAQ55526.1    GCES01148674    JAQ37648.1    KK718455    KFO56882.1    GCES01127075    JAQ59247.1    KQ418823    KOF85731.1    GCES01149435    JAQ36887.1    KK115748    KFM65920.1    GEDC01022176    JAS15122.1    AHAT01009041    U67082    AAC61661.1    GCES01166730    JAQ19592.1    JH000196    EGW05218.1    KQ432511    KOF62736.1    GCES01149620    JAQ36702.1    KQ422234    KOF75292.1    GG666659    EEN45306.1    AEMK02000052    DQIR01157226    HDB12703.1    KQ423998    KOF71750.1    KL871498    KGL92357.1    MWRG01011935    PRD25701.1    GEDC01009172    JAS28126.1    KQ419989    KOF81790.1    IACK01033759    LAA73279.1    GG666612    EEN48804.1    KQ417280    KOF92846.1    KQ419593    KOF83008.1    NTJE010122751    MBW00192.1    HAEC01002614    SBQ70691.1    NEVH01020350    PNF21388.1    HAEI01001609    SBR76904.1    HAEH01009865    SBR88251.1    HAEB01017022    SBQ63549.1    BX855614    KB201224    ESO98647.1    BK001638    DAA01863.1    KQ416399    KOF97100.1    KQ426774    KOF67845.1    AABR07065896    BC078841    CH474038    AAH78841.1    EDL89070.1   

Proteomes

UP000218220    UP000007151    UP000053268    UP000005204    UP000053240    UP000053454    + More
UP000007819    UP000221080    UP000269221    UP000197619    UP000264820    UP000001554    UP000265000    UP000000589    UP000007754    UP000053858    UP000052976    UP000054359    UP000192220    UP000018468    UP000265100    UP000001075    UP000008227    UP000261580    UP000248483    UP000261340    UP000235965    UP000252040    UP000245320    UP000265300    UP000000437    UP000030746    UP000192224    UP000079721    UP000002494   

PRIDE

H9JRL6    E9Q1L8    I3LQQ7   

Pfam

PF07776   zf-AD        + More
PF00096   zf-C2H2
PF05605   zf-Di19
PF16622   zf-C2H2_11
PF00651   BTB
PF01352   KRAB
PF12171   zf-C2H2_jaz
PF02023   SCAN

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR008598   Di19_Zn_binding_dom       
IPR017114   YY-1-like       
IPR041697   Znf-C2H2_11       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
IPR001965   Znf_PHD       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR022755   Znf_C2H2_jaz       
IPR003309   SCAN_dom       
IPR038269   SCAN_sf       
IPR017921   Znf_CTCHY       
IPR003656   Znf_BED       

SUPFAM

SSF57667   SSF57667        + More
SSF54695   SSF54695       
SSF109640   SSF109640       

Gene 3D

1.10.4020.10    

CDD

cd07765  KRAB_A-box
cd07936  SCAN

ProteinModelPortal

A0A1E1WFF8   A0A2A4IS91   A0A212F2R2   A0A2A4K6V4   A0A0N1PHJ4   H9JRL6   + More
A0A2H1W320   A0A0N1PI16   A0A212F9Y0   A0A212F2P5   A0A212ENY9   A0A0N1I3X2   A0A2H1WGD0   A0A0N0PED6   A0A0L8FHE3   A0A1E1WQF5   A0A1E1W0H9   A0A1B6DBX7   X1WX70   A0A212ENW2   A0A212F9X8   A0A2D0PY42   A0A2D0PWR4   A0A146RHM9   A0A3M0K4E7   A0A218UIH2   A0A2H1VGT5   A0A3Q2Z196   C4A0C2   A0A3Q2NUF1   Q7TMC9   A0A146PSZ5   A0A146SE69   A0A146SZ08   H0ZAX8   A0A0L8HKK1   A0A0A0AKP3   A0A2A4K7J9   A0A146QIG7   A0A146P127   A0A091EJR4   A0A146QTT3   A0A0L8H8X3   A0A146NZF9   A0A087TLD1   A0A2I4AJE8   A0A1B6CNT7   W5NI82   A0A3P8QTN8   P70590   A0A146MKP3   E9Q1L8   G3H7J7   A0A0L8FH52   A0A146NYT6   A0A0L8GE42   C3ZPS7   I3LQQ7   A0A0L8G597   A0A0A0AEJ0   A0A2P6KHB1   A0A1B6DR10   A0A3Q4I9Z9   A0A0L8GYY8   A0A2D4HMS7   C3ZDJ8   A0A0L8HUF8   A0A0L8H1A0   A0A2F0BB22   A0A1A8GI41   A0A2Y9ML31   A0A3Q0SI67   A0A3P8QSK4   A0A2J7PYH6   A0A341CZC3   A0A2U4C4Y0   A0A3Q0S875   A0A1A8P756   A0A340WQT6   A0A1A8Q424   A0A1A8FZM1   A0A3Q3DVR0   E9QJ51   V4ANB0   A0A2I4AJI5   A0A1W4Y6S8   A0A1S3WTG2   Q7M6W9   A0A0L8I7V0   A0A0L8FTV1   Q6AYY1  

PDB

2I13     E-value=2.4745e-14,     Score=188

KEGG

101735596    no KO assigned | (RefSeq) oocyte zinc finger protein XlCOF26-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003677   GO:0005730   GO:0000978   GO:0000980   GO:0001658   GO:0001227   GO:0006355   GO:0046872   GO:0008168   GO:0003700   GO:0007283   GO:0051038   GO:0003979   GO:0006508   GO:0016701   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Subcellular location

Nucleus  

Length:

197

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01039

Exp number, first 60 AAs:

0.00166

Total prob of N-in:

0.64811

inside

1  -  197

 

 

Pi

52.135652

Theta

66.169554

Tajima's D

-0.773279

CLR

17.006218

CSRT

0.178991050447478

Interpretation

Uncertain