HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.1	0.2	1.2	71	3	23	170	190
2	8.6	0.1	0.044	2.6	2	23	217	239
3	11.8	2.4	0.0042	0.25	1	23	259	281
4	13.7	0.1	0.0011	0.063	2	23	286	308
5	10.5	0.6	0.011	0.65	2	23	312	334
6	11.9	2.7	0.0038	0.23	2	19	342	359
7	8.2	4.0	0.059	3.5	1	23	371	394
8	10.4	0.7	0.012	0.69	3	23	402	422
9	20.9	1.9	5.4e-06	0.00032	1	23	428	451

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 1.2
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  Cg++F +  +L+ H r+H
  KWMTBOMO14605 170 CYQCGERFLNILDLREHSRRH 190
                    999*****999********99 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.044
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C+k  k   +L++H+   H
  KWMTBOMO14605 217 ECKLCSKDLKGLAQLQTHLIEaH 239
                    7*****************98877 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.0042
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg++F +   L  H+++H
  KWMTBOMO14605 259 FRCTICGQKFESFLRLHIHMNSH 281
                    89*******************99 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 0.0011
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cg s+ ++ +L++H +  H
  KWMTBOMO14605 286 VCEVCGVSYVNRTSLRVHVQGqH 308
                    6*****************98777 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.011
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kCp C+++F+ +s   +H+ + H
  KWMTBOMO14605 312 KCPQCPMVFPGNSAKSAHLHKvH 334
                    8*****************99988 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.0038
                    EETTTTEEESSHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                    +C +C+k+F+  ++L+ H
  KWMTBOMO14605 342 RCLHCDKTFPYAYQLNEH 359
                    7***************99 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.059
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C +Cgk F ++ nL+ H ++ H
  KWMTBOMO14605 371 HCCQECGKLFLTRQNLRIHTKSvH 394
                    5799*****************999 PP

  == domain 8  score: 10.4 bits;  conditional E-value: 0.012
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C+++F +k +L rH  tH
  KWMTBOMO14605 402 CAACDMRFFTKFDLSRHEATH 422
                    778***************999 PP

  == domain 9  score: 20.9 bits;  conditional E-value: 5.4e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C  C  +Fk+k++L+rHi++ H
  KWMTBOMO14605 428 FSCANCETKFKNKESLRRHIKRqH 451
                    89********************99 PP