Gene

KWMTBOMO14605

Pre Gene Modal

BGIBMGA008771

Annotation

PREDICTED:_gastrula_zinc_finger_protein_XlCGF46.1-like_[Bombyx_mori]

Location

Bomo_Chr24(+):11133554-11136738      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.506

CDS

ATGAATGAAGAGTATTGTCTTAACTTACCCGGCGAGACAGAAATATACGAAAATATTTTACGTGAAACGTTTGATATTATCTTATATCAACACAAAAGCACACAGAAATACATATGCAAGGGTTGCGTGGTAAAATTGCATGATGCCACAATCTTCAAGCAGCAAGTTTTGAGATCTGAAGAAGCATTCTTAGCTCTAATTCATCACCAAGAATCCTCATCTCATCTTGGCTCAGTCAAGCAAGAGATACCAGATGATGACACTAATGAGAAGAGTGCTGTGGCTGATGATGTGATAAATAATGGGTGTCTTATCAAAGACAAGCAGGTACCGCATCGCAGAAAAATTGGTGATACGGTTCCAAATGATGCCAAGAAACCGATGCTTAAGGCAAACAGGAAATGCCTTAAAAAGCAATCTCCGAATACAATTCAAAAGGAAAATACTTTGAAATTAATAAAAAACTCAAACATGTGCTTGTTTAAGTCGTTTAAGACGAAGTTCGGATGCTACCAATGCGGCGAACGTTTCCTAAATATCTTGGATTTACGGGAACATTCCCGCAGGCACACGGACACTAGGAAAACGGAGACCGGGGTCATGAACCTCAAGGGCGTGTCGTGTCTGAACGCCGAAATATCCGATCTCGAATGCAAACTGTGCTCTAAAGACCTCAAAGGTCTGGCCCAACTGCAGACGCACCTAATCGAAGCCCACGGCATAAAGTTCGAAAGTCCCAAGCACTATTTAGTGCCGTACGAGATTCGAAACGGCTTTCGCTGTACCATATGCGGTCAAAAGTTCGAGAGCTTTCTGCGTTTGCACATCCACATGAACAGCCACTCTTCAAACAATGTCTGCGAGGTCTGCGGGGTCTCGTACGTGAACCGGACCAGTCTCAGGGTCCACGTTCAAGGTCAGCACCGAGAGAAGAAATGCCCTCAATGCCCTATGGTGTTTCCGGGGAATTCGGCGAAATCGGCCCACTTGCACAAGGTCCACGCCAAGAAGCCGTACTTGAGACGCTGTTTGCATTGCGATAAGACATTCCCATACGCGTACCAGTTGAACGAGCACTGCGTTAGCGAACACGGCAGGAAGCGCGAGTCCCACTGCTGCCAAGAGTGCGGCAAGCTGTTCTTGACCCGGCAAAATCTGCGGATCCACACGAAATCGGTTCACGTCAGGGAACGCAAGCACGGCTGCGCTGCCTGCGACATGAGATTCTTCACGAAGTTCGATTTAAGTCGACACGAGGCGACGCACGAGGACGTCAGACCCTTCTCCTGCGCGAATTGCGAGACCAAATTCAAGAATAAGGAATCGCTGCGAAGGCATATTAAAAGGCAACATTCAATGTAG

Protein

MNEEYCLNLPGETEIYENILRETFDIILYQHKSTQKYICKGCVVKLHDATIFKQQVLRSEEAFLALIHHQESSSHLGSVKQEIPDDDTNEKSAVADDVINNGCLIKDKQVPHRRKIGDTVPNDAKKPMLKANRKCLKKQSPNTIQKENTLKLIKNSNMCLFKSFKTKFGCYQCGERFLNILDLREHSRRHTDTRKTETGVMNLKGVSCLNAEISDLECKLCSKDLKGLAQLQTHLIEAHGIKFESPKHYLVPYEIRNGFRCTICGQKFESFLRLHIHMNSHSSNNVCEVCGVSYVNRTSLRVHVQGQHREKKCPQCPMVFPGNSAKSAHLHKVHAKKPYLRRCLHCDKTFPYAYQLNEHCVSEHGRKRESHCCQECGKLFLTRQNLRIHTKSVHVRERKHGCAACDMRFFTKFDLSRHEATHEDVRPFSCANCETKFKNKESLRRHIKRQHSM

Uniprot

H9JGX4   H9JGX2   A0A1E1WMX7   A0A0N1IBG1   A0A212FM41   A0A212FGL8   + More
A0A2W1BKF2   A0A0N0P9X6   A0A0L7KVB5   A0A2H1VCI6   A0A194R9B4   A0A0N1IN28   H9JGV8   A0A2H1W4Q3   A0A0N0PET9   A0A194RAC3   A0A0N1I342   A0A212FGI7   A0A2H1W2Z8   H9JGW1   A0A2A4J945   A0A2H1W1N2   H9JGU3   A0A2A4J4B8   A0A3S2NKW4   A0A2H1W7P8   A0A2A4K6K7   A0A2A4K5P2   A0A212FGJ0   A0A0N0P9L4   A0A0L7LKX9   A0A3S2PBY9   A0A0N0PDP7   A0A2H1VJH2   H9JGV3   A0A194R9B9   A0A2A4JIU7   H9JGY8   A0A2A4K7C4   H9JGZ8   H9JGZ7   H9JGU9   A0A3S2LYM8   A0A2A4K655   A0A1E1W2N9   A0A1E1WEJ1   A0A2H1W1V6   A0A0L7KFK0   A0A0L7KT37   A0A0N1PHE9   A0A2H1VCN2   H9JGZ0   A0A0N0P9Y2   I4DPX2   A0A0L7L9S7   A0A2A4J8X5   A0A0N0PEI0   A0A2W1BEQ8   A0A1E1VY23   A0A2A4JJZ6   A0A0L7LA79   A0A0N1PFT1   A0A2H1W1Q8   H9JGY7   H9JGW8   A0A0L7KMW9   A0A2H1W9H2  

Pubmed

19121390    26354079    22118469    28756777    26227816    22651552    + More

EMBL

BABH01037767    GDQN01002777    JAT88277.1    KQ459348    KPJ01327.1    AGBW02007657    + More
OWR54801.1    AGBW02008655    OWR52853.1    KZ150113    PZC73316.1    KPJ01310.1    JTDY01005417    KOB67026.1    ODYU01001825    SOQ38559.1    KQ460500    KPJ14222.1    KPJ01325.1    BABH01037792    BABH01037793    ODYU01006258    SOQ47936.1    KQ459805    KPJ19902.1    KPJ14225.1    KPJ01321.1    OWR52852.1    ODYU01006008    SOQ47480.1    BABH01037786    BABH01037787    BABH01037788    NWSH01002560    PCG67980.1    ODYU01005781    SOQ47000.1    BABH01037827    BABH01037828    BABH01037829    NWSH01003163    PCG66841.1    RSAL01000335    RVE42465.1    ODYU01006883    SOQ49125.1    NWSH01000101    PCG79548.1    PCG79547.1    OWR52854.1    KPJ01322.1    JTDY01000693    KOB76193.1    RSAL01000113    RVE47005.1    KQ460130    KPJ17537.1    ODYU01002903    SOQ40977.1    BABH01037797    BABH01037798    BABH01037799    BABH01037800    BABH01037801    KPJ14227.1    NWSH01001274    PCG71891.1    BABH01037802    PCG79550.1    BABH01037836    BABH01037823    BABH01037811    BABH01037812    RVE47008.1    PCG79549.1    GDQN01009814    JAT81240.1    GDQN01005632    JAT85422.1    SOQ47003.1    JTDY01009952    KOB62102.1    JTDY01005941    KOB66448.1    KPJ17536.1    SOQ38561.1    BABH01037803    KPJ01330.1    AK403822    BAM19962.1    JTDY01002088    KOB72139.1    PCG67984.1    KPJ19901.1    PZC73308.1    GDQN01011465    JAT79589.1    NWSH01001214    PCG72096.1    KOB72141.1    KPJ01318.1    SOQ46998.1    BABH01037794    BABH01037779    JTDY01008298    KOB64638.1    SOQ49124.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000037510    UP000053240    UP000218220    + More
UP000283053   

PRIDE

H9JGX4    H9JGX2    H9JGV8    H9JGW1    H9JGU3    H9JGV3    + More
H9JGY8    H9JGZ8    H9JGZ7    H9JGU9    H9JGZ0    H9JGY7    H9JGW8   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF12756   zf-C2H2_2
PF01391   Collagen
PF05225   HTH_psq

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR012934   Znf_AD       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
IPR003656   Znf_BED       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR009057   Homeobox-like_sf       
IPR008160   Collagen       
IPR007889   HTH_Psq       

SUPFAM

SSF57667   SSF57667        + More
SSF46689   SSF46689       

ProteinModelPortal

H9JGX4   H9JGX2   A0A1E1WMX7   A0A0N1IBG1   A0A212FM41   A0A212FGL8   + More
A0A2W1BKF2   A0A0N0P9X6   A0A0L7KVB5   A0A2H1VCI6   A0A194R9B4   A0A0N1IN28   H9JGV8   A0A2H1W4Q3   A0A0N0PET9   A0A194RAC3   A0A0N1I342   A0A212FGI7   A0A2H1W2Z8   H9JGW1   A0A2A4J945   A0A2H1W1N2   H9JGU3   A0A2A4J4B8   A0A3S2NKW4   A0A2H1W7P8   A0A2A4K6K7   A0A2A4K5P2   A0A212FGJ0   A0A0N0P9L4   A0A0L7LKX9   A0A3S2PBY9   A0A0N0PDP7   A0A2H1VJH2   H9JGV3   A0A194R9B9   A0A2A4JIU7   H9JGY8   A0A2A4K7C4   H9JGZ8   H9JGZ7   H9JGU9   A0A3S2LYM8   A0A2A4K655   A0A1E1W2N9   A0A1E1WEJ1   A0A2H1W1V6   A0A0L7KFK0   A0A0L7KT37   A0A0N1PHE9   A0A2H1VCN2   H9JGZ0   A0A0N0P9Y2   I4DPX2   A0A0L7L9S7   A0A2A4J8X5   A0A0N0PEI0   A0A2W1BEQ8   A0A1E1VY23   A0A2A4JJZ6   A0A0L7LA79   A0A0N1PFT1   A0A2H1W1Q8   H9JGY7   H9JGW8   A0A0L7KMW9   A0A2H1W9H2  

PDB

5WJQ     E-value=5.1536e-14,     Score=189

KEGG

101744122    no KO assigned | (RefSeq) gastrula zinc finger protein XlCGF46.1-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003700   GO:0003677   GO:0016021   GO:0046872   GO:0006101   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

453

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00403

outside

1  -  453

 

 

Pi

194.441475

Theta

182.130173

Tajima's D

0.41606

CLR

0.131514

CSRT

0.489575521223939

Interpretation

Uncertain