HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.0	1.5	0.065	3.9	1	23	92	115
2	9.3	0.4	0.026	1.6	2	23	140	162
3	12.1	1.6	0.0034	0.2	2	23	183	204
4	12.4	1.2	0.0027	0.16	1	23	208	231
5	7.7	0.4	0.084	5	2	23	235	257
6	3.9	0.5	1.3	80	1	12	267	278
7	17.2	1.6	8.1e-05	0.0048	1	23	297	320
8	11.0	2.2	0.0074	0.44	1	23	326	348
9	19.7	1.6	1.3e-05	0.00078	1	23	354	377

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.065
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C  C+++F++ ++L++H    H
  KWMTBOMO14604  92 YRCFCCKEPFSDIDLLRQHTDNaH 115
                    89999**************87766 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.026
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                     C  Cg +  + s L+rH++  H
  KWMTBOMO14604 140 SCRMCGITMDSLSTLRRHLSDeH 162
                    6*****************99777 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.0034
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC +C+++F+   +L+ H ++H
  KWMTBOMO14604 183 KCQICHERFSVFRLLNIHVNKH 204
                    8*******************99 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.0027
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg  F++   L+ H+ + H
  KWMTBOMO14604 208 HVCHVCGAGFTSLVFLNLHRTRaH 231
                    79******************9988 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.084
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C  C+ +F ++ + k+H    H
  KWMTBOMO14604 235 TCRQCDATFVTRNDKKQHEINvH 257
                    8*************999977666 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 1.3
                    EEETTTTEEESS CS
        zf-C2H2   1 ykCpdCgksFkr 12 
                    ++Cp+C  +F +
  KWMTBOMO14604 267 FPCPYCEDRFYQ 278
                    89****955533 PP

  == domain 7  score: 17.2 bits;  conditional E-value: 8.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C +C k+F ++s+L++H +  H
  KWMTBOMO14604 297 HRCVVCAKTFVTRSLLNNHTKNvH 320
                    79******************9988 PP

  == domain 8  score: 11.0 bits;  conditional E-value: 0.0074
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C   F +ks+L rH+ tH
  KWMTBOMO14604 326 HKCDICQNLFYTKSDLGRHRVTH 348
                    79******************999 PP

  == domain 9  score: 19.7 bits;  conditional E-value: 1.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+ +F++k++L+rH ++ H
  KWMTBOMO14604 354 HNCGVCNAKFTTKDSLRRHAKRaH 377
                    68*******************999 PP