HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	10.0	2.3	0.016	0.94	1	23	115	137
2	7.5	0.9	0.094	5.6	1	22	206	227
3	14.0	0.2	0.00085	0.051	2	23	256	278
4	15.3	3.6	0.00033	0.02	2	23	302	323
5	7.2	0.3	0.12	7.3	2	23	327	348
6	10.4	5.4	0.011	0.67	1	23	353	376
7	3.4	3.7	1.9	1.1e+02	2	23	388	410
8	10.6	0.9	0.01	0.61	1	23	416	439
9	5.9	0.4	0.31	18	6	23	445	462
10	1.6	0.2	7.1	4.2e+02	3	23	491	512

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.016
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC +C k+F    +L+ H   H
  KWMTBOMO14598 115 YKCFVCRKTFFETNSLRDHTLEH 137
                    9******************9988 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.094
                    EEETTTTEEESSHHHHHHHHHC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt 22 
                    +kC +C+++F+  +   +H   
  KWMTBOMO14598 206 FKCFYCNEVFPEIHAVLQHTAF 227
                    8*********988888888765 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 0.00085
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++C++++++ ++ +rH+ + H
  KWMTBOMO14598 256 KCKICDQKYSDLDDIRRHLTVaH 278
                    8*****************99888 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 0.00033
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++C k+F++  +L+rH++ H
  KWMTBOMO14598 302 SCHKCLKTFNSFFLLNRHMNAH 323
                    6******************998 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.12
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ Cg  F +   L +H+ +H
  KWMTBOMO14598 327 VCETCGLGFMSHQRLINHRIVH 348
                    7*****************9998 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C++ F++k  L+ Hi + H
  KWMTBOMO14598 353 HRCDKCHEAFPTKLKLRYHIFKrH 376
                    79******************9988 PP

  == domain 7  score: 3.4 bits;  conditional E-value: 1.9
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kCp+C ++F+  +  ++H++  H
  KWMTBOMO14598 388 KCPHCLERFSEHYRKMTHLKEaH 410
                    8*****************99888 PP

  == domain 8  score: 10.6 bits;  conditional E-value: 0.01
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C  C+ +F+++  L+ H  + H
  KWMTBOMO14598 416 FECQSCKSVFPTRRALTEHTTKlH 439
                    89*****************99988 PP

  == domain 9  score: 5.9 bits;  conditional E-value: 0.31
                    TTEEESSHHHHHHHHHCC CS
        zf-C2H2   6 CgksFkrksnLkrHirtH 23 
                    C+k F++  +L +H + H
  KWMTBOMO14598 445 CKKYFSDCVDLLQHTSGH 462
                    **************9988 PP

  == domain 10  score: 1.6 bits;  conditional E-value: 7.1
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ C +  k+ + ++ H+   H
  KWMTBOMO14598 491 CKLCQEYRKNLDGMREHLIEtH 512
                    *****************98877 PP