Gene

KWMTBOMO02730

Pre Gene Modal

BGIBMGA003472

Annotation

PREDICTED:_aryl_hydrocarbon_receptor_nuclear_translocator_homolog_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):9702901-9713074      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 4.074

CDS

ATGTCTGCCGTGGCTCCAACTATCCCCGGGGCTGACCCAGCAAAGGATTTACAAAAACGCCGTGCTGGCAGTGTTGGATCAGATGAAGACGACGGAAGTGGTGGAAAATACACAAGGATGGAGGAGGACAATATTCAAGACAAGGAGCGTTTTGCAAGTCGTGAAAATCATTGCGAGATTGAACGTCGCAGGAGGAACAAGATGACGGCGTATATCACGGAACTATCTGATATGGTTCCAACATGCTCCGCACTCGCCCGGAAGCCAGACAAGCTAACCATACTGCGTATGGCAGTAGCTCACATGAAGGCATTGAGAGGCACTGGCAATACTTCTACAGATGGAACATATAAACCATCGTTTTTAACTGATCAAGAATTGAAACATTTAATTTTAGAAGCCGCAGATGGTTTCTTGTTTGTAGTAAGCTGCGATACTGGTCGCATTATTTACGTTAGCGACAGTATAGCACCAGTTCTAAATTATTCACAGGGTGAATGGTACTCGTCGTGTTTATACGACCAAGTGCACCCGGATGACGTTGAAAAAGTACGAGAGCAGTTAAGTACACAAGAACCTCAGAATACGGGTCGTATACTAGACTTGAAGACTGGAACCGTGAAAAAAGAAGGCCACCAATCTTCAATGCGGCAAGTAATGGGTTCACGTCGTGGATTCATCTGTCGGATGCGAGTCGGCGGCACCGCGGAGGGGGCGCACCTCGGCCGGCTGCGAGCGCGCAACTCGCTCGGCGCATCGCACGACGGTCACAACTACGCTGTCGTGCATTGTACAGGATATATCAAAAACTGGCCTCCGACAGGTATGCAAATGGACAGGCCAGTTGAAGATGAACTCCATTCGTCACATTGTTGTCTTGTAGCTATTGGACGATTACAGGTAACTTCGACCCCAAATAATTCAGAAAACAGTTTATGCAATGGTGGAGTTGAATTCGTTTCCCGTCATTCTGTTGACGGCCGCTTCACATTCGCCGATCAGCGCGCAACTCAAGTAATAGGATATGCCCCTGCCGATCTCTTAGGAAAATTGTGTTACGAATTCTATCATCCCGAGGACCAACAACACATGAGAGACAACTTCGATCAAGTATTGAAACTAAAAGGCCAAATAATATCGTTGATGTACCGGTTTCGAACGAAGAGCAGAGAATGGGTTTGGCTGAGAACATCAGCGTTCGCTTTCTTAAATCCGTACAACGACGATGTCGAATATATAGTATGCACCAATACTTTAGCAAATCGGTCGCTGGCGAGTTCAGGCGGTGAGGCAACCCCGGAGGAGGGGTATGACTATCACCTGCGGCACCGTGACGTGTACCCCGCCGCGCCACCCGCTCCCCCTGCGCCCCACGCGCCCGCCGCCCCGTCCGCGCTGCACCAGCATCACCACGCGCCCGCCGCAGAAGTAAGTGGAGTGTATGTGTCAGGCGGGGGAGGGGGTGGGGGCTCGGGCGCGCGCTCCCCCGCGGACACCGGCGCATACCCGGCACACTACGCGCCTAACTACTCGCCGCACCGACCCGCCAACACGCCCCCACACACCACTTGGACCACACTCCGACCGAGCGGCGGTGGCGGCGGCGGTGAGAGCTACGCCTACAGCGGCGAGACCACTGCCGGTGCGCCGCCCGACACCAGTCCAGGACGTTCGCCTCCTGCACCTCCCTATTTACCACCCGCACATTACCACCACAACCATCATCCTCATCCCACGCATGGCATGTGGACATGGCAAGGCGGAGCGGCGGGGGGCGGGGCAGCGGCACCCGAAGGTACGCACGCGCCGCACGAACTCTCGGACATGTTACAGATCCTCGACCAAAGCGGGACTGCAACCTTTGAAGACCTCAACATAAACATGTTTAATTCGAACTTTGAGTAA

Protein

MSAVAPTIPGADPAKDLQKRRAGSVGSDEDDGSGGKYTRMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDDVEKVREQLSTQEPQNTGRILDLKTGTVKKEGHQSSMRQVMGSRRGFICRMRVGGTAEGAHLGRLRARNSLGASHDGHNYAVVHCTGYIKNWPPTGMQMDRPVEDELHSSHCCLVAIGRLQVTSTPNNSENSLCNGGVEFVSRHSVDGRFTFADQRATQVIGYAPADLLGKLCYEFYHPEDQQHMRDNFDQVLKLKGQIISLMYRFRTKSREWVWLRTSAFAFLNPYNDDVEYIVCTNTLANRSLASSGGEATPEEGYDYHLRHRDVYPAAPPAPPAPHAPAAPSALHQHHHAPAAEVSGVYVSGGGGGGGSGARSPADTGAYPAHYAPNYSPHRPANTPPHTTWTTLRPSGGGGGGESYAYSGETTAGAPPDTSPGRSPPAPPYLPPAHYHHNHHPHPTHGMWTWQGGAAGGGAAAPEGTHAPHELSDMLQILDQSGTATFEDLNINMFNSNFE

Uniprot

H9J1T5   A0A2H1WWN2   A0A2A4JZI6   A0A2A4JYF7   A0A2A4JZ50   A0A1E1W6N2   + More
A0A2A4JYF9   A0A2A4JZW0   A0A2A4JYF2   S4PF93   A0A212FIY4   A0A194RHD5   A0A194PPE2   R9QBX3   A0A1Y1NBQ4   A0A1Y1NFF1   A0A0F7IIM2   A0A1B6EA94   A0A1B6C6B9   A0A2I4PDL4   A0A195F242   A0A3L8DWK1   A0A2R5LD96  

Pubmed

19121390    23622113    22118469    26354079    28004739    30249741    + More

EMBL

BABH01007994    BABH01007995    ODYU01011613    SOQ57468.1    NWSH01000357    PCG77054.1    + More
PCG77057.1    PCG77056.1    GDQN01008440    JAT82614.1    PCG77055.1    PCG77053.1    PCG77051.1    GAIX01004137    JAA88423.1    AGBW02008321    OWR53694.1    KQ460207    KPJ16735.1    KQ459597    KPI94848.1    JN228345    AFL70632.1    GEZM01007147    JAV95341.1    GEZM01007143    JAV95345.1    KP147913    AKG92750.1    GEDC01002447    JAS34851.1    GEDC01028344    JAS08954.1    KU647692    APU88436.1    KQ981856    KYN34533.1    QOIP01000003    RLU24817.1    GGLE01003378    MBY07504.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000078541    + More
UP000279307   

PRIDE

H9J1T5   

Pfam

PF00010   HLH        + More
PF00989   PAS
PF12739   TRAPPC-Trs85
PF08626   TRAPPC9-Trs120

Interpro

IPR036638   HLH_DNA-bd_sf        + More
IPR011598   bHLH_dom       
IPR001067   Nuc_translocat       
IPR000014   PAS       
IPR035965   PAS-like_dom_sf       
IPR001610   PAC       
IPR013767   PAS_fold       
IPR013935   TRAPP_II_complex_Trs120       
IPR024420   TRAPP_III_complex_Trs85       

SUPFAM

SSF55785   SSF55785        + More
SSF47459   SSF47459       

Gene 3D

4.10.280.10    

CDD

cd00083  HLH
cd00130  PAS

ProteinModelPortal

H9J1T5   A0A2H1WWN2   A0A2A4JZI6   A0A2A4JYF7   A0A2A4JZ50   A0A1E1W6N2   + More
A0A2A4JYF9   A0A2A4JZW0   A0A2A4JYF2   S4PF93   A0A212FIY4   A0A194RHD5   A0A194PPE2   R9QBX3   A0A1Y1NBQ4   A0A1Y1NFF1   A0A0F7IIM2   A0A1B6EA94   A0A1B6C6B9   A0A2I4PDL4   A0A195F242   A0A3L8DWK1   A0A2R5LD96  

PDB

6E3U     E-value=4.70463e-151,     Score=1373

KEGG

101735564    K09097 aryl hydrocarbon receptor nuclear translocator | (RefSeq) aryl hydrocarbon receptor nuclear t

GO

GO:0003700   GO:0005667   GO:0005634   GO:0005737   GO:0003677   GO:0046983   GO:0006355   GO:0006631   GO:0006635   GO:0006281   GO:0048384  

PANTHER

PTHR12975  

Subcellular location

Nucleus  

Length:

634

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00274

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00027

outside

1  -  634

 

 

Pi

255.853871

Theta

195.472963

Tajima's D

0.265453

CLR

1.57973

CSRT

0.447627618619069

Interpretation

Uncertain