HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.0	4.4	0.032	1.9	3	23	245	266
2	5.3	0.0	0.48	29	3	23	289	310
3	15.4	0.6	0.0003	0.018	2	23	333	354
4	14.2	0.2	0.0007	0.042	1	23	358	380
5	11.8	0.2	0.0042	0.25	1	23	385	408
6	16.1	2.0	0.00017	0.01	1	23	444	467

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.032
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C +Cg+ F+++ +++ H +  H
  KWMTBOMO14594 245 CYYCGENFSDPRLMREHTMNqH 266
                    88***************99887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.48
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C  C+++  + +++k+Hi   H
  KWMTBOMO14594 289 CRLCPQRIDDLDEFKSHIAGtH 310
                    99****************8777 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 0.0003
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C  C+ +F+  + L++H++ H
  KWMTBOMO14594 333 RCALCNLVFPYFHALNKHMNEH 354
                    7*******************99 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 0.0007
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cg  F +k  ++ H+++H
  KWMTBOMO14594 358 YVCETCGLGFVDKGRFVMHQQRH 380
                    9*********************9 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 0.0042
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cgk+Fk  +n   H  + H
  KWMTBOMO14594 385 FPCESCGKVFKAEYNRDLHVDRvH 408
                    89************9999887777 PP

  == domain 6  score: 16.1 bits;  conditional E-value: 0.00017
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C+k++ ++  L+ H r+ H
  KWMTBOMO14594 444 FPCTMCDKVCETRRTLTIHWRKdH 467
                    89********************99 PP