Gene

KWMTBOMO14594

Pre Gene Modal

BGIBMGA008758

Annotation

PREDICTED:_zinc_finger_protein_454-like_[Amyelois_transitella]

Location

Bomo_Chr24(+):10961749-10974493      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 3.773

CDS

ATGAGCATCCCGAAGGGCAAAGGTCCAATATTTGATCCGGGTTTGTGTCGATGTTGTGGTTCTATAAAGAAATGTCGTGTTCTGAATATAGAATACGAAAATAATGGGAAGAAAGAAGTTTATTCTGACATGATGATGGACTGCTTCGGCCTCTTACTGTCTCGCCTGGACGGGAAGCCATCTGAGAGGCTGGTCTGCGCCACATGCGTCATGAGAATCCGCGATGCCTTCTCCTTCCGACAGCAAGTACTCCACTGCGAAGAAGCCTTCTTACAAACGAAGGTGTATAATTCAACGAGTCTAGACTGTCAGTCTCTTCTAGAAGATGCGTTAGGGGACGGTGGCTCTCAAGTCGTTGTTGAAGTTGTTAAGACTGAACCCTGTGAGATGGATGAGCTTAGCATCGGCGGCGACATCTGTGCTGAGGTCTTACCTGACGTTAACGTCGAAGATACGAAGGCAGATCTAGGTTCGGATCACGATAGTTCAAACGACAACTTGCCATTAATACAACGCAGTGAGTGTAGAGAACCTAAGGAGGAAGTTCAGAGACCGATCACCAGGGCTAGTCAATTTAAACACTTGATGGGGAAGACGAATCGTATACCGATGACGAAGGTACAGCAGCTCATAAGAGAGAAAGACCCAACGTACATGACCGAAACGAACATATTGACCATAGTCGAATTCTCGTACGTGTGCCCGTTCAAATGTAGACACAATCACCTGCTCTGCTACTACTGCGGCGAGAACTTCTCGGATCCGCGTCTGATGCGGGAGCACACGATGAACCAGCACCACCCGAAGAAGTTTAAGGTGACCGAGCACAAGAACATGATCAAGGTGGATTTGACGAGGATCGACTGCAGACTGTGCCCTCAGAGGATCGACGATCTGGACGAGTTCAAGAGCCACATCGCTGGGACGCACAAGAAGAAGTACTACTTCGACTATAAGGACTCGGTGTTGCCGTTCCGTTTGACTAAGGAGGAGATCAGATGCGCGCTGTGCAACCTCGTGTTCCCTTACTTCCACGCTCTGAACAAACACATGAACGAGCATTTCAGTAATTACGTGTGCGAAACTTGCGGATTGGGTTTCGTGGACAAGGGCAGGTTCGTGATGCACCAGCAGCGCCACGAGCAGGGCGCCTTCCCCTGCGAGAGCTGCGGGAAGGTGTTCAAGGCGGAGTACAACCGGGACCTGCACGTGGACCGCGTGCACAGGAAGCGCGGCCGGGTCTACTGCCCGAAGTGCGACGTCAAGCTCATGTCCTACCCGCAGAAGCTGAAGCATCTGGTCGAGGTACACGGCGAGCAACCCATGTCGTTTCCTTGCACTATGTGCGATAAAGTATGCGAGACGCGACGCACCCTCACGATACACTGGAGGAAGGACCACTTGAAGGATTTCAGGTATAAAATGTTGGAAACGAACACAAAATGA

Protein

MSIPKGKGPIFDPGLCRCCGSIKKCRVLNIEYENNGKKEVYSDMMMDCFGLLLSRLDGKPSERLVCATCVMRIRDAFSFRQQVLHCEEAFLQTKVYNSTSLDCQSLLEDALGDGGSQVVVEVVKTEPCEMDELSIGGDICAEVLPDVNVEDTKADLGSDHDSSNDNLPLIQRSECREPKEEVQRPITRASQFKHLMGKTNRIPMTKVQQLIREKDPTYMTETNILTIVEFSYVCPFKCRHNHLLCYYCGENFSDPRLMREHTMNQHHPKKFKVTEHKNMIKVDLTRIDCRLCPQRIDDLDEFKSHIAGTHKKKYYFDYKDSVLPFRLTKEEIRCALCNLVFPYFHALNKHMNEHFSNYVCETCGLGFVDKGRFVMHQQRHEQGAFPCESCGKVFKAEYNRDLHVDRVHRKRGRVYCPKCDVKLMSYPQKLKHLVEVHGEQPMSFPCTMCDKVCETRRTLTIHWRKDHLKDFRYKMLETNTK

Uniprot

H9JGW1   A0A2A4JIU7   A0A212FGL8   A0A0N1IN28   A0A194R9B4   A0A2W1B758   + More
H9JGV8   H9JGY5   A0A2H1W7P8   A0A2A4J4B8   A0A0N1IBB3   A0A194Q9V0   A0A212FGJ0   A0A194RAC3   A0A2H1VP71   A0A212FGI7   A0A2A4J945   S4NL96   A0A0N1PGX7   A0A0N0PDP7   H9JGV9   A0A2H1W1N2   A0A0N0P9X6   A0A3S2PBY9   H9JGY7   A0A3S2LYM8   A0A3S2NKW4   A0A2H1VCI6   A0A3S2NBW7   A0A2A4K5P2   A0A2W1BKF2   A0A2A4K7C4   H9JGU3   A0A194Q9X6   A0A2A4K655   A0A1E1WEJ1   A0A194R8P8   A0A2H1VCI8   A0A3S2NGJ4   A0A2A4K6K7   A0A0L7KVB5   H9JGX2   A0A0N1I342   A0A0N0PET9   H9JGX6   A0A2H1VPT0   A0A1E1W2N9   A0A1E1VY23   A0A1E1WUH1   A0A0N0P9L4   A0A2H1W1Q8   A0A3S2L6W4   H9JGZ7   A0A212FM36   A0A2H1W4Q3   A0A0N1PHE9   A0A2H1W2Z8   A0A0N0P9L1  

Pubmed

19121390    22118469    26354079    28756777    23622113    26227816    + More

EMBL

BABH01037786    BABH01037787    BABH01037788    NWSH01001274    PCG71891.1    AGBW02008655    + More
OWR52853.1    KQ459348    KPJ01325.1    KQ460500    KPJ14222.1    KZ150324    PZC71398.1    BABH01037792    BABH01037793    BABH01037794    ODYU01006883    SOQ49125.1    NWSH01003163    PCG66841.1    KQ460130    KPJ17535.1    KQ459249    KPJ02298.1    OWR52854.1    KPJ14225.1    ODYU01003449    SOQ42242.1    OWR52852.1    NWSH01002560    PCG67980.1    GAIX01014736    JAA77824.1    KPJ01324.1    KPJ17537.1    BABH01037791    ODYU01005781    SOQ47000.1    KPJ01310.1    RSAL01000113    RVE47005.1    RVE47008.1    RSAL01000335    RVE42465.1    ODYU01001825    SOQ38559.1    RVE47007.1    NWSH01000101    PCG79547.1    KZ150113    PZC73316.1    PCG79550.1    BABH01037827    BABH01037828    BABH01037829    KPJ02297.1    PCG79549.1    GDQN01005632    JAT85422.1    KPJ14213.1    SOQ38560.1    RVE47011.1    PCG79548.1    JTDY01005417    KOB67026.1    BABH01037767    KPJ01321.1    KQ459805    KPJ19902.1    BABH01037765    BABH01037766    SOQ42244.1    GDQN01009814    JAT81240.1    GDQN01011465    JAT79589.1    GDQN01000613    JAT90441.1    KPJ01322.1    SOQ46998.1    RVE47010.1    BABH01037823    AGBW02007657    OWR54805.1    ODYU01006258    SOQ47936.1    KPJ17536.1    ODYU01006008    SOQ47480.1    KPJ01309.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000283053    + More
UP000037510   

PRIDE

H9JGW1    H9JGV8    H9JGY5    H9JGV9    H9JGY7    H9JGU3    + More
H9JGX2    H9JGX6    H9JGZ7   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF12756   zf-C2H2_2
PF05225   HTH_psq

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR003656   Znf_BED       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF46689   SSF46689       

ProteinModelPortal

H9JGW1   A0A2A4JIU7   A0A212FGL8   A0A0N1IN28   A0A194R9B4   A0A2W1B758   + More
H9JGV8   H9JGY5   A0A2H1W7P8   A0A2A4J4B8   A0A0N1IBB3   A0A194Q9V0   A0A212FGJ0   A0A194RAC3   A0A2H1VP71   A0A212FGI7   A0A2A4J945   S4NL96   A0A0N1PGX7   A0A0N0PDP7   H9JGV9   A0A2H1W1N2   A0A0N0P9X6   A0A3S2PBY9   H9JGY7   A0A3S2LYM8   A0A3S2NKW4   A0A2H1VCI6   A0A3S2NBW7   A0A2A4K5P2   A0A2W1BKF2   A0A2A4K7C4   H9JGU3   A0A194Q9X6   A0A2A4K655   A0A1E1WEJ1   A0A194R8P8   A0A2H1VCI8   A0A3S2NGJ4   A0A2A4K6K7   A0A0L7KVB5   H9JGX2   A0A0N1I342   A0A0N0PET9   H9JGX6   A0A2H1VPT0   A0A1E1W2N9   A0A1E1VY23   A0A1E1WUH1   A0A0N0P9L4   A0A2H1W1Q8   A0A3S2L6W4   H9JGZ7   A0A212FM36   A0A2H1W4Q3   A0A0N1PHE9   A0A2H1W2Z8   A0A0N0P9L1  

PDB

2I13     E-value=9.61729e-05,     Score=110

KEGG

101744554    no KO assigned | (RefSeq) zinc finger protein 260-like

GO

GO:0005634   GO:0008270   GO:0003676   GO:0003677   GO:0016021   GO:0046872   GO:0006101   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

481

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0011

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00171

outside

1  -  481

 

 

Pi

229.447837

Theta

170.772964

Tajima's D

2.060353

CLR

0.020223

CSRT

0.892755362231888

Interpretation

Uncertain