HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.3	1.0	0.056	3.3	1	23	239	261
2	4.8	0.1	0.7	42	3	21	285	303
3	16.6	1.4	0.00012	0.0074	2	23	328	349
4	6.3	1.5	0.24	14	2	23	354	375
5	4.7	3.3	0.73	44	5	23	385	404
6	7.5	1.5	0.095	5.7	1	23	410	433
7	17.0	1.4	9.3e-05	0.0056	1	23	439	462
8	15.0	1.8	0.0004	0.024	1	23	468	490
9	25.8	0.9	1.5e-07	8.9e-06	1	23	496	518
10	21.1	1.0	4.7e-06	0.00028	1	23	524	547

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.056
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C  ++++++ L+ H  tH
  KWMTBOMO14593 239 YFCIYCRNVYTDPDKLREHTLTH 261
                    55669*****************9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.7
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C  C k+  + ++Lk+H+ 
  KWMTBOMO14593 285 CRLCQKTIDNVESLKTHLV 303
                    99***************86 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 0.00012
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+ sF+  + Lk+H+  H
  KWMTBOMO14593 328 RCTECDASFSFFHALKKHMAEH 349
                    8******************999 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.24
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cg  +    +L+ H+++H
  KWMTBOMO14593 354 ICDVCGAHYFEERMLVLHQKSH 375
                    5*******************99 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.73
                    TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                    +Cgk+Fk+k++   H  + H
  KWMTBOMO14593 385 HCGKVFKSKHSRYLHETKiH 404
                    8********99888877766 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.095
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C+++F + s   rH++  H
  KWMTBOMO14593 410 FQCSKCDQVFFSYSIRYRHMMEaH 433
                    89********99999999998877 PP

  == domain 7  score: 17.0 bits;  conditional E-value: 9.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C++ + ++ +L+ H r+ H
  KWMTBOMO14593 439 FPCEYCDRAYVSRKSLREHNRRyH 462
                    89*******************999 PP

  == domain 8  score: 15.0 bits;  conditional E-value: 0.0004
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C k+F  +s Lk H+ tH
  KWMTBOMO14593 468 HQCDLCEKRFYLPSRLKEHMATH 490
                    79********************9 PP

  == domain 9  score: 25.8 bits;  conditional E-value: 1.5e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgks++r   Lk+H+++H
  KWMTBOMO14593 496 FRCEYCGKSYPRLRGLKVHMQSH 518
                    89*******************99 PP

  == domain 10  score: 21.1 bits;  conditional E-value: 4.7e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C+ +F+++ nLk+H ++ H
  KWMTBOMO14593 524 FRCSICNATFTQNVNLKNHVKRqH 547
                    89*******************999 PP