Gene

KWMTBOMO14593

Pre Gene Modal

BGIBMGA008757

Annotation

PREDICTED:_zinc_finger_protein_62-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr24(+):10947939-10957153      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 4.69

CDS

ATGGCAGTTCCAAGCGTCAAGGGGCCAATTGTAGACCCGGGTTTGTGCCGGTGCTGTGGATCTATTAAAAAATGTCGCGTCTTGAATGAGGAGTATGAATTTTGTGGAGAAAAAGAAATTTATTCGGATATGTTCTTCGACTGCTTTGGGCTTTTGTTATCACACCTTGACAGAGCGCAAGCTGAGAGGCTCATATGTGCCACGTGTGTTACAAGGCTTCGTGACGCGACCGCATTCCGGAAGCAAGTGCTGATCTGTGAGCAGACCCTACTCCAGGTTGCATACGAAGCAGAAAATGAAAGGTTCGACATTAAAAGCGAAACGAATATAAAACAGGAAGCGGAAGACAATAATGCGACACGGCTTGAAGATGTCCAAAATGACACCAACCATTACATTGATGACGCAGGTAACGATTCAGGTAGCCTGTCAAGCGAGCCACTAATAAACTTGCGCAAGAAAACGCGCAAAAAGAAAAAGGAAAAGTTGAAAACAAGAAAGAAACATAATAGGGAATCTCTGGATGGTGATTGTGATGGTACCAAGGAAAAAAAATTAAGACATTTAATAGATAAGAAATATTACGTTTTTCCGGAAATTGGTAAAAAAGTAGCATCAAAATCGAGAACCGGTTCAGAAACGAAATCGTATTTAAACACGATAACGATTGTCGAAAATTCATTCGTTTGCCCATTCGATACTTCGTTCAGCGATTACTTCTGTATATACTGTAGGAACGTTTACACCGATCCCGACAAACTCCGGGAGCACACGCTGACCCACGACCCGACCTCATTCAAGACTCTGGCCATAAACAAGAAGCTGATATTACTGGACGTGTACAGAGTAGACTGTAGATTATGCCAAAAGACCATAGACAACGTGGAATCGTTGAAAACTCATTTAGTCGATGCCCACTCGATGTGCTTTGACGATACGAAATGCGATTTCGTACAGTTCCGTTTGACAGTGACGAATTTGCGGTGCACTGAATGTGACGCGTCCTTTAGCTTCTTCCACGCCCTGAAGAAGCACATGGCCGAGCATTTCGGCAATTGCATATGCGACGTGTGCGGAGCGCATTACTTCGAGGAACGTATGTTAGTGCTACACCAGAAATCGCATCGGCGTATCGACGAGAGCTTCCCCTGTCACTGCGGGAAGGTATTCAAATCGAAACACAGCCGGTATTTGCACGAGACGAAGATACACAAGAAGGAGCCGGTCTTCCAGTGCAGCAAGTGCGATCAAGTGTTCTTCTCCTATTCGATTCGGTACAGGCACATGATGGAGGCTCACGGTGAGCACCGAGTGTTCCCCTGTGAGTACTGCGACAGGGCGTACGTTAGTCGGAAATCGTTGAGGGAACACAATCGGAGGTACCATCTGAAGATATTCAAGCATCAGTGCGATTTGTGCGAGAAGCGTTTTTATTTGCCGTCCCGTCTCAAAGAGCACATGGCGACACACACGGGCGAGAGGAACTTCAGGTGCGAGTACTGCGGGAAGAGTTACCCCAGGTTGAGAGGTCTGAAGGTACACATGCAGTCCCATAGTACGGAGAAGAAGTTTCGATGTTCGATATGCAACGCGACCTTCACGCAGAACGTCAATCTGAAGAACCACGTCAAAAGGCAGCATCAGGACGTGGACATAGAGAACGGTTACCACGAGTAA

Protein

MAVPSVKGPIVDPGLCRCCGSIKKCRVLNEEYEFCGEKEIYSDMFFDCFGLLLSHLDRAQAERLICATCVTRLRDATAFRKQVLICEQTLLQVAYEAENERFDIKSETNIKQEAEDNNATRLEDVQNDTNHYIDDAGNDSGSLSSEPLINLRKKTRKKKKEKLKTRKKHNRESLDGDCDGTKEKKLRHLIDKKYYVFPEIGKKVASKSRTGSETKSYLNTITIVENSFVCPFDTSFSDYFCIYCRNVYTDPDKLREHTLTHDPTSFKTLAINKKLILLDVYRVDCRLCQKTIDNVESLKTHLVDAHSMCFDDTKCDFVQFRLTVTNLRCTECDASFSFFHALKKHMAEHFGNCICDVCGAHYFEERMLVLHQKSHRRIDESFPCHCGKVFKSKHSRYLHETKIHKKEPVFQCSKCDQVFFSYSIRYRHMMEAHGEHRVFPCEYCDRAYVSRKSLREHNRRYHLKIFKHQCDLCEKRFYLPSRLKEHMATHTGERNFRCEYCGKSYPRLRGLKVHMQSHSTEKKFRCSICNATFTQNVNLKNHVKRQHQDVDIENGYHE

Uniprot

H9JGW0   A0A2H1VP71   A0A212FGJ0   A0A2A4J945   A0A194RAC3   H9JGV8   + More
A0A2A4J4B8   A0A2H1W7P8   A0A212FGI7   A0A0N1PGX7   H9JGV9   H9JGY5   A0A0N1IBB3   A0A194Q9V0   H9JGW1   A0A2A4JIU7   A0A212FGL8   A0A0N1IN28   A0A194R9B4   S4NL96   A0A2H1VCI6   A0A2H1W1N2   A0A3S2PBY9   A0A0N0P9X6   A0A0N0PDP7   H9JGU3   A0A2W1BKF2   A0A2A4K7C4   H9JGY7   A0A1E1WEJ1   A0A0N0PET9   A0A0N1I342   A0A3S2NKW4   A0A2A4K6K7   A0A2H1W4Q3   A0A2A4K5P2   A0A2H1W2Z8   A0A0N0P9L1   A0A2H1VCI8   H9JGX2   A0A2H1W1Q8   A0A194Q9X6   A0A0L7KVB5   H9JGZ0   A0A212FM90   A0A0N0P9L4   A0A194R9B9   A0A194QA48   A0A3S2LYM8   A0A0N1PHE9  

Pubmed

19121390    22118469    26354079    23622113    28756777    26227816    + More

EMBL

BABH01037789    ODYU01003449    SOQ42242.1    AGBW02008655    OWR52854.1    NWSH01002560    + More
PCG67980.1    KQ460500    KPJ14225.1    BABH01037792    BABH01037793    NWSH01003163    PCG66841.1    ODYU01006883    SOQ49125.1    OWR52852.1    KQ459348    KPJ01324.1    BABH01037791    BABH01037794    KQ460130    KPJ17535.1    KQ459249    KPJ02298.1    BABH01037786    BABH01037787    BABH01037788    NWSH01001274    PCG71891.1    OWR52853.1    KPJ01325.1    KPJ14222.1    GAIX01014736    JAA77824.1    ODYU01001825    SOQ38559.1    ODYU01005781    SOQ47000.1    RSAL01000113    RVE47005.1    KPJ01310.1    KPJ17537.1    BABH01037827    BABH01037828    BABH01037829    KZ150113    PZC73316.1    NWSH01000101    PCG79550.1    GDQN01005632    JAT85422.1    KQ459805    KPJ19902.1    KPJ01321.1    RSAL01000335    RVE42465.1    PCG79548.1    ODYU01006258    SOQ47936.1    PCG79547.1    ODYU01006008    SOQ47480.1    KPJ01309.1    SOQ38560.1    BABH01037767    SOQ46998.1    KPJ02297.1    JTDY01005417    KOB67026.1    BABH01037803    AGBW02007657    OWR54799.1    KPJ01322.1    KPJ14227.1    KPJ02299.1    RVE47008.1    KPJ17536.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000283053    + More
UP000037510   

PRIDE

H9JGW0    H9JGV8    H9JGV9    H9JGY5    H9JGW1    H9JGU3    + More
H9JGY7    H9JGX2    H9JGZ0   

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF12756   zf-C2H2_2
PF05225   HTH_psq
PF01391   Collagen

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR012934   Znf_AD       
IPR003656   Znf_BED       
IPR041661   ZN622/Rei1/Reh1_Znf-C2H2       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR008160   Collagen       

SUPFAM

SSF57667   SSF57667        + More
SSF46689   SSF46689       

ProteinModelPortal

H9JGW0   A0A2H1VP71   A0A212FGJ0   A0A2A4J945   A0A194RAC3   H9JGV8   + More
A0A2A4J4B8   A0A2H1W7P8   A0A212FGI7   A0A0N1PGX7   H9JGV9   H9JGY5   A0A0N1IBB3   A0A194Q9V0   H9JGW1   A0A2A4JIU7   A0A212FGL8   A0A0N1IN28   A0A194R9B4   S4NL96   A0A2H1VCI6   A0A2H1W1N2   A0A3S2PBY9   A0A0N0P9X6   A0A0N0PDP7   H9JGU3   A0A2W1BKF2   A0A2A4K7C4   H9JGY7   A0A1E1WEJ1   A0A0N0PET9   A0A0N1I342   A0A3S2NKW4   A0A2A4K6K7   A0A2H1W4Q3   A0A2A4K5P2   A0A2H1W2Z8   A0A0N0P9L1   A0A2H1VCI8   H9JGX2   A0A2H1W1Q8   A0A194Q9X6   A0A0L7KVB5   H9JGZ0   A0A212FM90   A0A0N0P9L4   A0A194R9B9   A0A194QA48   A0A3S2LYM8   A0A0N1PHE9  

PDB

5V3M     E-value=2.27317e-18,     Score=228

KEGG

101744699    K22534 PR domain zinc finger protein 5 | (RefSeq) zinc finger protein 62-like

GO

GO:0003676   GO:0008270   GO:0005634   GO:0003677   GO:0016021   GO:0046872   GO:0006101   GO:0003824   GO:0008152   GO:0016491   GO:0015930  

Length:

558

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00034

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00039

outside

1  -  558

 

 

Pi

208.501398

Theta

166.010011

Tajima's D

0.995862

CLR

0.321912

CSRT

0.651117444127794

Interpretation

Uncertain