HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.2	2.5	3.8e-05	0.0023	1	23	259	281
2	4.7	0.1	0.75	45	3	23	305	326
3	12.9	0.8	0.0019	0.11	2	23	349	370
4	2.5	1.5	3.7	2.2e+02	1	23	374	397
5	10.8	1.0	0.0086	0.52	1	23	407	430
6	3.9	1.4	1.3	79	1	16	436	451
7	13.7	1.1	0.001	0.062	1	23	465	488
8	19.8	1.9	1.2e-05	0.00071	1	23	494	516
9	25.5	0.7	1.8e-07	1.1e-05	1	23	522	544
10	14.8	1.4	0.00047	0.028	1	23	550	573

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C ++F+++s+L++H  +H
  KWMTBOMO14592 259 YHCMYCREMFTDPSELRVHTLKH 281
                    89******************999 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.75
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C  C+    + ++Lk+H+ t H
  KWMTBOMO14592 305 CRLCPTNIDNIDSLKTHLTTvH 326
                    999***************9999 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.0019
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cg s+++   LkrH+ +H
  KWMTBOMO14592 349 SCTECGLSCNSFQALKRHLAVH 370
                    6******************999 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 3.7
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++Cg  +    +L+ H ++ H
  KWMTBOMO14592 374 FICEECGTHYFEERLLTFHKKRaH 397
                    78******9998888888888877 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.0086
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ Cgk F++k     H  + H
  KWMTBOMO14592 407 YVCDRCGKNFRSKKGKSYHVAKiH 430
                    99***********99888888777 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 1.3
                    EEETTTTEEESSHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnL 16 
                    + C++C+++F + ++ 
  KWMTBOMO14592 436 FACNKCDEVFLSYHLK 451
                    78********444444 PP

  == domain 7  score: 13.7 bits;  conditional E-value: 0.001
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C+k ++++  L+ H r+ H
  KWMTBOMO14592 465 FPCSSCDKIYNNRKALREHNRKnH 488
                    89*******************999 PP

  == domain 8  score: 19.8 bits;  conditional E-value: 1.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kCp C+++F  +s+Lk H+ +H
  KWMTBOMO14592 494 HKCPLCDRRFYVPSELKDHMTSH 516
                    79******************999 PP

  == domain 9  score: 25.5 bits;  conditional E-value: 1.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk+++r   Lk+H+ +H
  KWMTBOMO14592 522 YRCEYCGKTYPRLKALKVHMESH 544
                    9*******************999 PP

  == domain 10  score: 14.8 bits;  conditional E-value: 0.00047
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C+ s+++  n+k+H ++ H
  KWMTBOMO14592 550 YKCGLCTASYTQLNNYKNHVKSkH 573
                    9********************999 PP