HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.8	0.3	3	1.8e+02	1	23	255	278
2	2.0	0.2	5.3	3.2e+02	2	23	303	325
3	11.1	5.3	0.0067	0.4	1	23	344	366
4	15.8	2.1	0.00022	0.013	2	23	371	392
5	14.5	0.2	0.00059	0.035	1	23	397	419
6	2.3	4.2	4.3	2.6e+02	2	23	425	447
7	17.6	0.9	6.1e-05	0.0036	1	23	453	476
8	27.7	0.6	3.6e-08	2.2e-06	3	23	483	503
9	14.2	4.8	0.00074	0.044	1	23	509	531

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 3
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C +C+  F     L+ H  + H
  KWMTBOMO14581 255 FQCFYCTDDFMEIAKLREHTAKaH 278
                    89****999999999999988877 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 5.3
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC  C     + + ++rH+   H
  KWMTBOMO14581 303 KCCQCELNLVDVEAMRRHLAEaH 325
                    899***************98877 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.0067
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C+ Cgk++    +L++H+++H
  KWMTBOMO14581 344 YTCHLCGKRYHVFRSLTTHLNVH 366
                    9********************99 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 0.00022
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++CgksF +   Lk+H+ tH
  KWMTBOMO14581 371 VCDVCGKSFMNTKRLKVHRATH 392
                    8********************9 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 0.00059
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk+ k+k +  +H+ tH
  KWMTBOMO14581 397 YPCSECGKVLKTKISKANHMGTH 419
                    99******************999 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 4.3
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++C ++ k+  +  +H++  H
  KWMTBOMO14581 425 KCHICFEPMKHYNDRLKHMSErH 447
                    8******************9988 PP

  == domain 7  score: 17.6 bits;  conditional E-value: 6.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++Cp+Cg+ F+ k+ L +H r  H
  KWMTBOMO14581 453 FVCPVCGREFNLKHYLATHVRQtH 476
                    89*******************988 PP

  == domain 8  score: 27.7 bits;  conditional E-value: 3.6e-08
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    CpdCg++Fk+++ Lk+H+ +H
  KWMTBOMO14581 483 CPDCGMTFKTNYGLKKHMLRH 503
                    ********************9 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 0.00074
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C k++ r++ L+ H+rtH
  KWMTBOMO14581 509 FKCSVCCKTYARSYTLREHLRTH 531
                    8*********************9 PP