HMM length of domain: 57 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	0.0	0.0	3.9	7.3e+02	6	29	138	161
2	49.8	0.5	1.1e-15	2.1e-13	6	57	194	245

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 3.9
                    SS-HHHHHHHHHHHHHSSS-SHHH CS
       Homeobox   6 tftkeqleeLeelFeenrypsaee 29 
                    +f+++    L++l  + +y+ ae+
  KWMTBOMO14484 138 NFSAHNHAKLQSLWLKAHYMEAER 161
                    899999999********9999886 PP

  == domain 2  score: 49.8 bits;  conditional E-value: 1.1e-15
                    SS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
       Homeobox   6 tftkeqleeLeelFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                    +f+++   +L + +  n+yps +e++eLA+ +gL++ qV++WF+NrR+++++
  KWMTBOMO14484 194 CFKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQ 245
                    58899999*****************************************996 PP