Gene

KWMTBOMO14484

Pre Gene Modal

BGIBMGA000156

Annotation

PREDICTED:_homeobox_protein_six1a-like_[Amyelois_transitella]

Location

Bomo_Chr24(+):7665180-7711254      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 3.095

CDS

ATGCTTAAAAGATCGCGCGGACTATGCGTGCGTGAACCAGACAGAGACTGGCCGTATACTTATTGTTCAAGTGAAATATTCAAAACTCATTACAAATACAAACAGTGCCACGTCGTCAAAGTGGCTGGGGACGAGCATCTGGACATGCTGGGGGGCCCCGAGTGGGGGCAGCGGGAGGCCACCCCCCCTAGAGACGCTCCCCTGCCGAGTTTTGGCTTTACACAGGAGCAGGTCGCCTGCGTTTGCGAGGTCCTTCAGCAGGCCGGCAACATAGACCGGCTGGGGAGGTTCCTCTGGTCGCTGCCGGCATGCGAGCGTCTTCACGCCCACGAGTCGGTGCTGAAGGCGAAGGCCATGGTCGCCTTCCACCGGGGGAACTTCAAGGAACTGTACAGGCTGCTGGAGTCGCACAACTTCAGCGCACACAACCACGCAAAGCTGCAGAGTCTATGGTTGAAAGCTCACTACATGGAAGCGGAGCGGCTTCGGGGTAGGCCACTCGGAGCAGTTGGCAAATACCGGGTGAGGCGTAAATTCCCCCTCCCCAGAACGATATGGGACGGAGAGGAGACCTCTTACTGTTTTAAGGAAAAGTCCAGATCCGTCCTCCGCGACTGGTATCTCCACAACCCGTATCCTTCGCCACGAGAAAAGAGAGAGCTGGCCGAAACGACCGGACTAACCACAGTACAAGTATCGAATTGGTTCAAGAATCGCAGACAGAGAGACAGACAAGCCGAGCATAAAGATAGCGGCACCGGAGGCGATAAGCAGCTGGACTCGTCCACGGATGAAGACAGCGACGCGCCCCCCGCGCCCCTACCTCCCCCGCAACCACTCTACCCCCTCTACGACCACCCCCTAGCCCACCTCCAGTACCACCACGCGTGA

Protein

MLKRSRGLCVREPDRDWPYTYCSSEIFKTHYKYKQCHVVKVAGDEHLDMLGGPEWGQREATPPRDAPLPSFGFTQEQVACVCEVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPREKRELAETTGLTTVQVSNWFKNRRQRDRQAEHKDSGTGGDKQLDSSTDEDSDAPPAPLPPPQPLYPLYDHPLAHLQYHHA

Uniprot

A0A0N1I4W2   A0A2A4JKE5   A0A212EJS1   A0A3S2TSC8   A0A1Y1KRN9   A0A084WBG8   + More
A0A182QNY7   B4KND7   A0A3R7QN13   B4J6N7   H3CPU0   A0A1W5B8V5   Q4SQK8   A0A2D0QK21   A0A3Q4AXY4   A0A0F8D0G0   A0A2P2IDE0   A0A1S3Q661   A0A3Q3A1A6   H2RYD1   A0A3Q3NNA6   A0A147A7G7   G3P9K7   A0A3B4BK82   A0A3P8Y8H5   A0A3Q2DDS6   A0A3Q3IDJ8   Q98TH1   A0A3N0XWV2   A0A3P8RUN7   A0A3B5AU65   A0A2U9CC63  

Pubmed

26354079    22118469    28004739    24438588    17994087    18057021    + More
15496914    25835551    21551351    25069045    11401394    23594743   

EMBL

KQ459286    KPJ02034.1    NWSH01001278    PCG71872.1    AGBW02014396    OWR41753.1    + More
RSAL01000009    RVE53788.1    GEZM01077592    JAV63258.1    ATLV01022353    ATLV01022354    ATLV01022355    KE525331    KFB47562.1    AXCN02001076    CH933808    EDW09990.1    KRG05018.1    QCYY01002123    ROT72682.1    CH916367    EDW00940.1    CAAE01014532    CAF97074.1    KQ041007    KKF31908.1    IACF01006440    LAB72023.1    GCES01011870    JAR74453.1    BX537274    BX571708    BC079528    BC164650    AB040708    AAH79528.1    AAI64650.1    BAB40699.1    RJVU01057857    ROK15681.1    CP026257    AWP13783.1   

Proteomes

UP000053268    UP000218220    UP000007151    UP000283053    UP000030765    UP000075886    + More
UP000009192    UP000283509    UP000001070    UP000007303    UP000192224    UP000221080    UP000261620    UP000087266    UP000264800    UP000005226    UP000261660    UP000265000    UP000007635    UP000261440    UP000265140    UP000265020    UP000261600    UP000000437    UP000265080    UP000261400    UP000246464   

Pfam

PF00046   Homeodomain        + More
PF16878   SIX1_SD

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom       
IPR031701   SIX1_SD       
IPR009057   Homeobox-like_sf       
IPR031278   SIX1       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A0N1I4W2   A0A2A4JKE5   A0A212EJS1   A0A3S2TSC8   A0A1Y1KRN9   A0A084WBG8   + More
A0A182QNY7   B4KND7   A0A3R7QN13   B4J6N7   H3CPU0   A0A1W5B8V5   Q4SQK8   A0A2D0QK21   A0A3Q4AXY4   A0A0F8D0G0   A0A2P2IDE0   A0A1S3Q661   A0A3Q3A1A6   H2RYD1   A0A3Q3NNA6   A0A147A7G7   G3P9K7   A0A3B4BK82   A0A3P8Y8H5   A0A3Q2DDS6   A0A3Q3IDJ8   Q98TH1   A0A3N0XWV2   A0A3P8RUN7   A0A3B5AU65   A0A2U9CC63  

PDB

4EGC     E-value=8.8041e-96,     Score=892

KEGG

101735990    K15614 homeobox protein SIX1 | (RefSeq) homeobox protein SIX2

GO

GO:0005634   GO:0006355   GO:0043565   GO:0003677   GO:0001744   GO:0007623   GO:0008347   GO:0045944   GO:0035271   GO:0001746   GO:0009649   GO:0000981   GO:0008134   GO:0007283   GO:0001745   GO:0048793   GO:0048513   GO:0008283   GO:0003700   GO:0006915   GO:0005667   GO:0000976   GO:0045892   GO:0048856   GO:0008168   GO:0016020   GO:0005524   GO:0005507   GO:0004713   GO:0016491   GO:0015930  

PANTHER

PTHR10390:SF66  

Subcellular location

Nucleus  

Length:

296

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03741

outside

1  -  296

 

 

Pi

225.604645

Theta

161.675431

Tajima's D

1.406527

CLR

0.030197

CSRT

0.761461926903655

Interpretation

Uncertain