HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	12.6	2.1	0.0023	0.14	1	23	504	526
2	11.1	1.4	0.007	0.42	2	23	620	642
3	7.9	0.4	0.071	4.2	1	23	646	668
4	2.5	1.8	3.9	2.3e+02	2	23	690	712
5	6.6	0.2	0.19	11	1	23	716	739
6	8.9	0.1	0.034	2	2	23	762	784
7	15.8	3.1	0.00022	0.013	2	23	795	816
8	13.1	2.3	0.0016	0.093	3	23	833	853
9	10.5	0.8	0.011	0.63	1	23	859	881
10	3.9	2.7	1.3	80	1	23	887	911
11	7.8	0.3	0.078	4.7	3	23	965	985

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++Cp+Cg  + +   LkrH+++H
  KWMTBOMO14448 504 HVCPKCGNAYASETCLKRHLKVH 526
                    79*******************99 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.007
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+k F++k++L  H+++ H
  KWMTBOMO14448 620 KCTTCSKNFNSKEELAFHRKRvH 642
                    8*****************99999 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.071
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+  + +  +L  H+++H
  KWMTBOMO14448 646 FPCKFCPTDYDTGKDLFEHLKIH 668
                    89*******************99 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 3.9
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC  C+ sFk   +Lk H +  H
  KWMTBOMO14448 690 KCFMCNNSFKELPQLKCHVMEdH 712
                    8*********9999998887766 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.19
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C +C    ++  ++ +Hi++ H
  KWMTBOMO14448 716 YSCRYCRAAIPNIIDFAKHIKSfH 739
                    89*******************999 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.034
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC++Cg+ F   + L  H+   H
  KWMTBOMO14448 762 KCEECGMQFHEADKLALHQAEtH 784
                    8*****************99888 PP

  == domain 7  score: 15.8 bits;  conditional E-value: 0.00022
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+dC ++F +   L++H+r+H
  KWMTBOMO14448 795 QCEDCRRVFVSHKGLQSHRRVH 816
                    8********************6 PP

  == domain 8  score: 13.1 bits;  conditional E-value: 0.0016
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +C k++k+ + L++H+r H
  KWMTBOMO14448 833 CVECRKMCKDMEALTSHMRLH 853
                    ********************9 PP

  == domain 9  score: 10.5 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+ +F + +  ++H+  H
  KWMTBOMO14448 859 FPCKFCDFRFATAEKRRVHQELH 881
                    89******************998 PP

  == domain 10  score: 3.9 bits;  conditional E-value: 1.3
                    EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                    y+C +C + +++   Lk H r+  H
  KWMTBOMO14448 887 YVCFICEYQCTSENRLKLHKRSakH 911
                    99*****************998666 PP

  == domain 11  score: 7.8 bits;  conditional E-value: 0.078
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cg +F++ks++  H ++H
  KWMTBOMO14448 965 CDVCGDKFPSKSLMLEHKQSH 985
                    9*****************999 PP