HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.2	1.6	0.0066	0.39	2	23	99	121
2	11.1	0.6	0.007	0.42	1	23	126	149
3	13.0	0.4	0.0017	0.1	1	23	152	174
4	20.4	0.4	7.6e-06	0.00046	2	20	179	197
5	22.9	1.4	1.2e-06	7.5e-05	1	23	215	238
6	13.0	0.3	0.0017	0.1	1	23	244	266
7	12.9	0.2	0.0019	0.11	3	23	274	294
8	12.6	4.5	0.0023	0.14	1	23	300	322
9	8.1	0.5	0.063	3.8	5	23	329	347

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0066
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                     C++C k++ +  nL++H+ + H
  KWMTBOMO14365  99 MCKECLKTYATICNLRSHYIRvH 121
                    5******************9988 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.007
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC +C++++ +k  L++H+r  H
  KWMTBOMO14365 126 YKCIECPRKYGSKAYLNVHRRDsH 149
                    8999*****************888 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.0017
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk+F +   +k H   H
  KWMTBOMO14365 152 FVCSECGKTFYNGNTFKEHELGH 174
                    89**********99999998766 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 7.6e-06
                    EETTTTEEESSHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHi 20 
                    +CpdCg+++k+ks +k+H 
  KWMTBOMO14365 179 VCPDCGRTYKNKSTYKKHK 197
                    7*****************5 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 1.2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cgk++++k +L++Hi+  H
  KWMTBOMO14365 215 FTCDYCGKKYTQKMSLRVHIQYeH 238
                    89******************9988 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 0.0017
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cgk++  +s Lk+Hi +H
  KWMTBOMO14365 244 HVCEWCGKKYWAQSRLKAHIVKH 266
                    79******************999 PP

  == domain 7  score: 12.9 bits;  conditional E-value: 0.0019
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cg +F +k++L  H r+H
  KWMTBOMO14365 274 CTICGGKFVSKESLLYHTRIH 294
                    *******************99 PP

  == domain 8  score: 12.6 bits;  conditional E-value: 0.0023
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC++C+ sF + s    Hi++H
  KWMTBOMO14365 300 YKCKHCDASFISASRRSEHIKRH 322
                    9*********************6 PP

  == domain 9  score: 8.1 bits;  conditional E-value: 0.063
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    +C+ +F++k  + +H ++H
  KWMTBOMO14365 329 ECNIKFTSKTYMLKHKKSH 347
                    6****************99 PP