Silkworm Genome Informatics Database

Gene

KWMTBOMO14365

Pre Gene Modal

BGIBMGA013305

Annotation

Zinc_finger_protein_510_[Papilio_machaon]

Location

Bomo_Chr24(+):3659607-3661771 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.634

CDS

ATGCTCAATACTGTAACGAATAGTGTAGAAGCCACTACGGAAAATCTGTACGGAAGCAAAACCCTATATTTATCTTTGAATCCTGAAGATTTCACCAGCAACCAATTTTACGATTGCAGAAAAATTATGAATTGTAAGGAAGCTTCTAGAAGATTCTTAGAAATTTTAAATCCAACAAAACCAATTAAATCTGAGCAAAAAGATATTATAATTGAAAAAGAACATAAACGTTCACCTAATTTCGATATACCGTTAAGCAAAATTTTATTCGACGAAAACAACCCTGATATACTTATGTGCAAGGAATGTCTTAAGACATATGCGACAATATGTAATCTAAGAAGTCATTATATAAGAGTGCATGCTCCAAAAAAGTACAAATGTATTGAGTGTCCGCGTAAGTATGGCTCCAAGGCATACTTGAACGTTCACAGAAGGGACAGTCATTCTGTGTTTGTTTGTTCTGAATGCGGTAAAACATTCTATAACGGTAATACATTCAAAGAACATGAGTTGGGTCATCAAACGAGCATAGTATGCCCGGATTGCGGTAGGACGTATAAAAATAAAAGTACCTATAAAAAGCACAAGGAAAACAATGTATGTGAGCAACAATGCCGGGCTCATCCGTCTCAAGCTAAATTCACATGTGATTATTGTGGCAAAAAATATACTCAAAAAATGTCTTTACGTGTTCATATTCAATATGAGCATGGTAATTATAAGTCACATGTATGCGAATGGTGCGGTAAGAAATATTGGGCCCAGAGTAGACTGAAAGCGCATATAGTCAAGCATACAAAAGAAAAAAATTTTGGTTGTACCATCTGTGGCGGGAAGTTTGTATCAAAAGAGTCTTTATTATATCACACACGAATCCATACTGGGGAAAAACCATACAAATGTAAGCATTGTGATGCAAGTTTTATTTCGGCTTCTCGAAGATCAGAACATATTAAACGTCATCATGTTGGGGTCGGTTTAGAGTGCAATATAAAATTTACTTCCAAAACATACATGCTAAAACACAAGAAGAGTCATGAAGAGATAAAGAATGAGATCCAAGAACAGAATATGGGGCCCGAAGTCAATATTGGTAGTCCAATTTGTAATGAGGCAGCTGCAATACCAACTGTTTCATATGAAGTTTACGAAGATAATAATGAAACTGAAACTGATAATACTTATTATTTGCAAGTGTGTGATGATAGTCAAGAGTACATAATTAACTTCCCAAAGAATGAAGTTTAA

Protein

MLNTVTNSVEATTENLYGSKTLYLSLNPEDFTSNQFYDCRKIMNCKEASRRFLEILNPTKPIKSEQKDIIIEKEHKRSPNFDIPLSKILFDENNPDILMCKECLKTYATICNLRSHYIRVHAPKKYKCIECPRKYGSKAYLNVHRRDSHSVFVCSECGKTFYNGNTFKEHELGHQTSIVCPDCGRTYKNKSTYKKHKENNVCEQQCRAHPSQAKFTCDYCGKKYTQKMSLRVHIQYEHGNYKSHVCEWCGKKYWAQSRLKAHIVKHTKEKNFGCTICGGKFVSKESLLYHTRIHTGEKPYKCKHCDASFISASRRSEHIKRHHVGVGLECNIKFTSKTYMLKHKKSHEEIKNEIQEQNMGPEVNIGSPICNEAAAIPTVSYEVYEDNNETETDNTYYLQVCDDSQEYIINFPKNEV

Uniprot

A0A2A4K2W0 A0A2H1VT92 A0A194RJK0 A0A194QMY8 A0A212ERF6 A0A1E1W5A4 + More
A0A1E1W228 A0A1E1WS62 A0A1E1WM96 A0A212ENN1 A0A2A4J049 H9JRM3 H0WEC9 W5LUN2 A0A075M1K0 A0A3B3I2Y6 A0A2K6M9H7 A0A3B1K1T2 A0A2K6QXD4

Pubmed

26354079 22118469 19121390 23594743 25329095 25001002 + More
17554307 25362486

EMBL

NWSH01000255 PCG77982.1 ODYU01004306 SOQ44029.1 KQ460124 KPJ17614.1 + More
KQ458859 KPJ04846.1 AGBW02013061 OWR44034.1 GDQN01008891 JAT82163.1 GDQN01010006 JAT81048.1 GDQN01001240 JAT89814.1 GDQN01002942 JAT88112.1 AGBW02013627 OWR43089.1 NWSH01004191 PCG65371.1 BABH01031739 CR854965 KJ916178 AIF73264.1

Proteomes

UP000218220 UP000053240 UP000053268 UP000007151 UP000005204 UP000000437 + More
UP000018467 UP000001038 UP000233180 UP000233200

PRIDE

H9JRM3

Pfam

PF00096   zf-C2H2        + More
PF07776   zf-AD
PF01352   KRAB

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR012934   Znf_AD
IPR017114   YY-1-like
IPR036051   KRAB_dom_sf
IPR001909   KRAB
IPR017125   Znf_PRDM5-like

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

CDD

cd07765 KRAB_A-box

ProteinModelPortal

A0A2A4K2W0 A0A2H1VT92 A0A194RJK0 A0A194QMY8 A0A212ERF6 A0A1E1W5A4 + More
A0A1E1W228 A0A1E1WS62 A0A1E1WM96 A0A212ENN1 A0A2A4J049 H9JRM3 H0WEC9 W5LUN2 A0A075M1K0 A0A3B3I2Y6 A0A2K6M9H7 A0A3B1K1T2 A0A2K6QXD4

PDB

5V3M E-value=1.70135e-23, Score=271

KEGG

101737577 K09228 KRAB domain-containing zinc finger protein | (RefSeq) zinc finger protein 28-like

GO

GO:0003676 GO:0008270 GO:0005634 GO:0046872 GO:0006355 GO:0000976 GO:0005975 GO:0016773 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00907

outside

1 - 416

Pi

310.497399

Theta

215.139159

Tajima's D

1.492126

CLR

0.000006

CSRT

0.778861056947153

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics