HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.8	0.1	2.9	1.8e+02	8	23	361	377
2	8.3	0.6	0.054	3.2	1	23	382	404
3	20.6	1.6	6.8e-06	0.00041	1	23	417	439
4	18.2	2.2	3.9e-05	0.0023	1	23	446	468
5	21.6	0.2	3.3e-06	0.0002	1	23	474	496
6	21.8	0.1	2.8e-06	0.00017	1	23	502	524
7	18.7	0.4	2.6e-05	0.0016	1	23	530	553
8	13.1	6.4	0.0016	0.093	1	23	559	582
9	19.2	0.9	1.9e-05	0.0011	2	23	589	610
10	20.3	1.7	8.5e-06	0.00051	1	23	616	638
11	9.3	0.1	0.026	1.5	1	21	644	664

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 2.9
                    EEESSHHHHHHHHHC.C CS
        zf-C2H2   8 ksFkrksnLkrHirt.H 23 
                    +s +++   ++H+r+ H
  KWMTBOMO14303 361 ESTSDPNAAMSHMRRaH 377
                    6788889999*****99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.054
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C  +F+r+ ++++H   H
  KWMTBOMO14303 382 YICSLCAAMFRRRTDYTTHFAEH 404
                    89*****************9887 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 6.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  Cgk+F +k+ L++H+++H
  KWMTBOMO14303 417 HRCARCGKTFASKYTLQAHLKIH 439
                    79*******************99 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 3.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ C ksF ++ nL++H +tH
  KWMTBOMO14303 446 FSCSQCEKSFFTQQNLNQHEKTH 468
                    89********************9 PP

  == domain 5  score: 21.6 bits;  conditional E-value: 3.3e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+ksF +++nL++H  +H
  KWMTBOMO14303 474 FVCGVCNKSFGTQHNLEVHGIVH 496
                    89*****************8877 PP

  == domain 6  score: 21.8 bits;  conditional E-value: 2.8e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C k F r+ + + H+rtH
  KWMTBOMO14303 502 YVCGVCEKAFARRAEVRDHMRTH 524
                    9*********************9 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 2.6e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+ Cg  F+++snL +H+r  H
  KWMTBOMO14303 530 FSCDTCGAAFSQRSNLDSHRRAtH 553
                    89*******************888 PP

  == domain 8  score: 13.1 bits;  conditional E-value: 0.0016
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C +C+k+Fkr+ +L+ Hi+  H
  KWMTBOMO14303 559 HHCAHCPKRFKRRRLLEYHIKAsH 582
                    67******************9888 PP

  == domain 9  score: 19.2 bits;  conditional E-value: 1.9e-05
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ Cg sF  ++++k+H r+H
  KWMTBOMO14303 589 KCDTCGASFVYPEHYKKHVRIH 610
                    8*******************99 PP

  == domain 10  score: 20.3 bits;  conditional E-value: 8.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk+F++++n ++H+ tH
  KWMTBOMO14303 616 YVCEICGKTFTTRDNRNTHRFTH 638
                    9*******************999 PP

  == domain 11  score: 9.3 bits;  conditional E-value: 0.026
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y+C  Cg  F rk +L +H++
  KWMTBOMO14303 644 YECLSCGAGFMRKQLLYAHMS 664
                    89******************7 PP