Silkworm Genome Informatics Database

Gene

KWMTBOMO14303

Pre Gene Modal

BGIBMGA008140

Annotation

PREDICTED:_zinc_finger_protein_35_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr24(-):1243394-1261795 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.245

CDS

ATGAAAGCAGATTTAATAAATCAATTCAAAACCTCGATTCAAAGTCACAACATTAACTATGCTACGTACGAAACAGATGTCAGTAAAACTAAAAGTAATACGCCAGTTGCGGCAACACCGAAGATCGGAAGGATAGTGTTGCCAGCATCAAAATTAAGGCCGTTAACATCGGTTGAGCTTTTAAAAGTTGGGAATAGATCACATTTATTGACTGATAAGTTTAAAGCAGGCTTACCAAAAGTAACGATCAATTCACTACCATCACCGGCAGTCAGGCAGCCGGAAGCTCCCGAAAAGCCCGACGTGCTGGCAACACTCACGAAGTTTCTGCAGAAACCGGAAACGACGGACGAGGACGATCTAAAAAAATATTTGATCACTAAAGACGGCACCAAAGAGATATTCAGCAAGAGTGAGACCAGCGCTGAACTTGCTGATGCCCATGTCGATGAGACCAATGACGCTGACGAGGACGCCATGGAGATCGACGAGGATTTTGCTGTGTCCGTGGTACCATCGTCTAATGGAAAACTAGTGTTTGAAGTGCAAGGTTTCAAGAACATACCGAGCCAGCCAGCGGAGCAGGAATACTTGAACGTGGACATACTGCAATCTCTGGACCCCAGCAATGAGGAGTGCGACAGGAACAACATCATCGTAGGCAAGGTCGAGATACTGGACAGTGGGAACGAAGAGGAGGAAGCTCAAACAATCGTATTGAACGGAGACAACTCGTCCATACTGAGGATGATGAGCGGCCAGAAGTTCATGTACGATGGCAACGAGATATCCCTGATGCTGCCCGAGGGCGACGCCCGCGACGAACGCGACGGGCAAGATTCCAACGAGGAGTCGCAGATAGAGCTACAGGTCTCCGGAGACGAGGAGACCGCCAACGCCATCATAGCGGCCGCGAGGGAGCAAGGCGGCGCGTTCATCAAGGTGGAGAGCGGGGAGATGTACCGCGTGCAGTCGGTGCGCGGCGCCGCGGACGGGCTCGCCGACACCATCGCGCACCGGGACGGACTCTTCGTCTGTCTGCTGTGCCGGAACAGCGACAAGCCAGAAAATGAAAAAATGGAGAGCACGAGCGACCCCAACGCGGCCATGAGCCACATGCGGCGCGCGCACGACGCCCGCGTCTACATCTGCAGCCTCTGCGCCGCCATGTTCCGCAGGAGGACCGACTACACCACGCACTTCGCCGAGCACTCCCTGAAGCCGCGGGCGCGTGCGGCGGGCGGGTCGCACCGCTGCGCGCGCTGCGGGAAGACCTTCGCCTCCAAGTACACGCTGCAGGCGCACCTCAAGATCCACTCCGACCGCCCCCGCCCCTTCAGCTGCAGCCAGTGCGAGAAGTCCTTCTTCACGCAGCAGAACCTCAACCAACACGAGAAGACCCACTCCAGTGTCAAGGACTTCGTGTGCGGAGTCTGTAACAAGTCGTTCGGCACGCAGCACAACCTGGAGGTACACGGCATCGTCCACTCCCGCGAGAAGCCGTACGTGTGCGGCGTGTGCGAGAAGGCGTTCGCGAGGAGGGCCGAAGTGAGGGACCACATGAGGACGCACACAGGCGAGCGTCCGTTCTCGTGCGACACGTGCGGCGCGGCGTTCTCGCAGCGCTCCAACCTGGACTCGCACCGCCGCGCCACGCACCTCAACGAGCGCCGCCACCACTGCGCGCACTGCCCCAAGCGGTTCAAGCGGAGGAGGTTGCTGGAGTACCACATCAAGGCTTCGCACACCGGCGAGCGCCCGCTGAAGTGCGACACGTGCGGCGCTTCCTTCGTGTACCCCGAGCATTATAAAAAGCACGTGCGCATCCACACCGGCGAACGGCCCTACGTATGTGAGATCTGCGGCAAGACGTTCACGACGCGCGACAACCGCAACACGCACCGCTTCACGCACAGCGACAAGAAGCCCTACGAGTGCCTGTCCTGCGGCGCCGGCTTCATGAGGAAGCAGCTGCTCTACGCGCACATGAGCGCCAGTGGTCACCTGGCCGAGTCCATAGTCGTGAACCAGCCGAGGGTCACGAAGGTGCACACTAGCAACGTGGCGACGCAGATACTGGACGTACAGACATTCGAAACCAAAAAGTATGAAACTCTTTTCGAAAACGAGGAGTTAAGTCTGGACGCGAGCGGGAAGCAGCCAGAGACGGCGCCAGCCGCCGAGCTGCTAGACGCGCAGGATATGCAGCAGACGCAGATCGTGGCCAACGATGAGAACGGTGACGTGGTGCGGCTCATCCAAGTGCAACTGCCCGGGGGCGCCGGCGGCTGGGTGGCCGTCAATGACTAG

Protein

MKADLINQFKTSIQSHNINYATYETDVSKTKSNTPVAATPKIGRIVLPASKLRPLTSVELLKVGNRSHLLTDKFKAGLPKVTINSLPSPAVRQPEAPEKPDVLATLTKFLQKPETTDEDDLKKYLITKDGTKEIFSKSETSAELADAHVDETNDADEDAMEIDEDFAVSVVPSSNGKLVFEVQGFKNIPSQPAEQEYLNVDILQSLDPSNEECDRNNIIVGKVEILDSGNEEEEAQTIVLNGDNSSILRMMSGQKFMYDGNEISLMLPEGDARDERDGQDSNEESQIELQVSGDEETANAIIAAAREQGGAFIKVESGEMYRVQSVRGAADGLADTIAHRDGLFVCLLCRNSDKPENEKMESTSDPNAAMSHMRRAHDARVYICSLCAAMFRRRTDYTTHFAEHSLKPRARAAGGSHRCARCGKTFASKYTLQAHLKIHSDRPRPFSCSQCEKSFFTQQNLNQHEKTHSSVKDFVCGVCNKSFGTQHNLEVHGIVHSREKPYVCGVCEKAFARRAEVRDHMRTHTGERPFSCDTCGAAFSQRSNLDSHRRATHLNERRHHCAHCPKRFKRRRLLEYHIKASHTGERPLKCDTCGASFVYPEHYKKHVRIHTGERPYVCEICGKTFTTRDNRNTHRFTHSDKKPYECLSCGAGFMRKQLLYAHMSASGHLAESIVVNQPRVTKVHTSNVATQILDVQTFETKKYETLFENEELSLDASGKQPETAPAAELLDAQDMQQTQIVANDENGDVVRLIQVQLPGGAGGWVAVND

Uniprot

H9JF43 A0A2A4IZQ4 A0A3S2NKI9 A0A2H1WDE0 A0A2W1BSG7 A0A310S8N0 + More
A0A1W4XM08 A0A194Q748 A0A182RL14

Pubmed

19121390 28756777 26354079

EMBL

BABH01026899 BABH01026900 BABH01026901 NWSH01004703 PCG64754.1 RSAL01000055 + More
RVE49940.1 ODYU01007805 SOQ50882.1 KZ149968 PZC76137.1 KQ764369 OAD54534.1 KQ459386 KPJ01209.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000192223 UP000053268 UP000075900 + More

PRIDE

H9JF43

Pfam

PF00096 zf-C2H2

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type
IPR015943   WD40/YVTN_repeat-like_dom_sf

SUPFAM

SSF57667 SSF57667

Gene 3D

2.130.10.10

ProteinModelPortal

H9JF43 A0A2A4IZQ4 A0A3S2NKI9 A0A2H1WDE0 A0A2W1BSG7 A0A310S8N0 + More
A0A1W4XM08 A0A194Q748 A0A182RL14

PDB

5V3M E-value=1.17131e-41, Score=430

KEGG

101738245 no KO assigned | (RefSeq) zinc finger protein 35

GO

GO:0003676 GO:0000981 GO:0040034 GO:0046872 GO:0005634 GO:0008270 GO:0005488 GO:0005507 GO:0004713 GO:0016491 GO:0015930

Length:

769

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00425

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00013

outside

1 - 769

Pi

294.026194

Theta

172.89119

Tajima's D

2.021357

CLR

0.081665

CSRT

0.885105744712764

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics