HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.4	0.2	0.0056	0.34	1	23	222	245
2	13.0	0.2	0.0017	0.1	2	23	259	281
3	10.4	5.6	0.011	0.69	1	23	287	309
4	10.0	0.2	0.015	0.91	1	23	343	365
5	13.4	0.6	0.0013	0.08	2	23	369	389
6	10.2	0.4	0.014	0.83	3	23	409	430
7	12.3	3.0	0.0029	0.18	1	23	436	458
8	4.4	6.1	0.92	55	2	23	464	485
9	16.7	2.3	0.00011	0.0067	1	23	491	514

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0056
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C+k+F    +L++H  + H
  KWMTBOMO14285 222 YKCTLCNKRFMEEIELQQHEAMiH 245
                    9******************88877 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.0017
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C  +Fk+  +L++H+ t H
  KWMTBOMO14285 259 ECTLCEIKFKSIKMLQQHQDTiH 281
                    6******************9999 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.011
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+k+F +   L+ H+ +H
  KWMTBOMO14285 287 FPCKSCSKKFYSLKKLQLHQHRH 309
                    89*******************99 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.015
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ Cgk   +   L++Hi+tH
  KWMTBOMO14285 343 HICEMCGKALLSETALNNHIKTH 365
                    67********************9 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 0.0013
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp+C+k+    s+L++H+ +H
  KWMTBOMO14285 369 TCPVCNKRL-KESLLEKHMTRH 389
                    7********.***********9 PP

  == domain 6  score: 10.2 bits;  conditional E-value: 0.014
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    Cp+Cg   + k +L++H+++ H
  KWMTBOMO14285 409 CPVCGHLVRKKLDLEAHMNRyH 430
                    ********************99 PP

  == domain 7  score: 12.3 bits;  conditional E-value: 0.0029
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC  C+k F+ +  L+ H+ tH
  KWMTBOMO14285 436 FKCQQCSKEFCGRARLREHQLTH 458
                    8*********************9 PP

  == domain 8  score: 4.4 bits;  conditional E-value: 0.92
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++C+k+  ++  Lk H+r+H
  KWMTBOMO14285 464 ICNICHKKMANRVCLKMHLRIH 485
                    5********************9 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 0.00011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++Cg++F+++s L +Hi++ H
  KWMTBOMO14285 491 YTCEHCGEKFRSSSILSTHIQKkH 514
                    9********************999 PP