SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO14285
Pre Gene Modal
BGIBMGA008148
Annotation
PREDICTED:_zinc_finger_protein_26-like_[Amyelois_transitella]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.307
 

Sequence

CDS
ATGCATGAAACCAACCTTGAAGACAGCACAAACAGCATTCTTTGGCTGCACGAAAAGTTGAAATGCCTCTGGAACTGCACAAAATTCTGTGGGATGTGCTTAGAAACTGAAAATCTGAATGCCATCAACTTGGAGCTGGTTATAAGTCGACAGAAAGAGTCCAAGTCATTATTGGATATTATTAATTTTATATTTAGAGATGATGTTGCAAATATAATGTCTTGTTCCTATATATGTGATAAATGCACAGAGAAGACACTACAATCCTACATTTTTATTAGCAACACAAAGAAATTATCCAAAGTAATAAACACATGTGTTAATGATTTACATTCAAAAGTGACAGATATTAATGAACAAGTATTAAGTACTTTAGAATGTAACAAATCTAACATCGTGATAGTTTTGGAAGAAGACGATGATACTCTTGAAGACATCAAAGAATTAACAACTGTGTCCGAAATAGTGCCAACACAGAATCCTGTACTCAAAAAACTACCACAGACTAATATTAGTAGCTCTAAATCTACAGTTGTGATAGTCGAAGATGATGACGTTTTGAATAGAATTAATACGAACAAGCACATAACCGCGAAAGGTGCGTCATTTGATAATGTGGTGGATTACGACAAACATGTATTTTTAAAGCACAACAATGGAGGATATAAATGTACATTGTGCAATAAGAGATTCATGGAAGAAATTGAATTGCAACAACATGAGGCAATGATACACAGTAGCACGGTCCAGTATAAGAAGAGGAGTAAACATATTGAGTGTACACTGTGTGAAATCAAATTTAAAAGTATTAAAATGTTGCAACAACATCAAGACACGATTCACAAAGCTGGCACGCTCTTTCCTTGCAAGAGCTGTTCGAAGAAATTCTACAGCTTAAAGAAGCTGCAATTGCATCAACACCGACATTACGAAAGGATTCAATGTGAGAAATGCCGAAGAAAAATCATTAGTGCCTTTTACCTCAAGCACGTGATTAAGTGTAGCTCTGAGTGGAACATGAAGAAACATATTTGTGAAATGTGCGGGAAAGCGCTCCTTTCAGAAACCGCTTTGAACAATCACATAAAAACACACCAGATTGTCACATGTCCGGTGTGCAACAAACGACTGAAAGAGTCTTTGCTCGAGAAACACATGACGAGACATAAAAAAAATGTAGAGACCACTGGCTATTCAAATATTAAAGCCATACCGATGCGAGCTTGTCCGGTCTGCGGCCACTTGGTACGAAAAAAACTCGATCTCGAAGCGCATATGAACCGCTACCATTACAAAATCAAGCCCTTTAAATGCCAACAATGCAGCAAAGAGTTCTGTGGACGAGCCAGATTGAGGGAACACCAGTTGACTCACGAGGAGAAGTCTTGCATTTGTAACATATGTCACAAGAAAATGGCTAATCGTGTATGCCTTAAAATGCATCTTAGGATACATACAGGCGAATGTCCTTACACTTGTGAGCATTGTGGCGAAAAATTTCGATCATCAAGCATACTCAGTACTCACATACAAAAGAAACATGCCGAGAAGACCGTCTCATGTCCATCTTGCGACAGTATGTTCCATTTTGTGAGAGAAATGAGGCATCACTTCAAACATGTTCATTGGAAAGGGAAAGACCGACCTTTCGATTATAAAGAAGTTGTGCCTAAAATGTACCATCACCTGTTCGAAGACGGGAGACTGCCCAAACTTGATGATAATGAAACTTGA
Protein
MHETNLEDSTNSILWLHEKLKCLWNCTKFCGMCLETENLNAINLELVISRQKESKSLLDIINFIFRDDVANIMSCSYICDKCTEKTLQSYIFISNTKKLSKVINTCVNDLHSKVTDINEQVLSTLECNKSNIVIVLEEDDDTLEDIKELTTVSEIVPTQNPVLKKLPQTNISSSKSTVVIVEDDDVLNRINTNKHITAKGASFDNVVDYDKHVFLKHNNGGYKCTLCNKRFMEEIELQQHEAMIHSSTVQYKKRSKHIECTLCEIKFKSIKMLQQHQDTIHKAGTLFPCKSCSKKFYSLKKLQLHQHRHYERIQCEKCRRKIISAFYLKHVIKCSSEWNMKKHICEMCGKALLSETALNNHIKTHQIVTCPVCNKRLKESLLEKHMTRHKKNVETTGYSNIKAIPMRACPVCGHLVRKKLDLEAHMNRYHYKIKPFKCQQCSKEFCGRARLREHQLTHEEKSCICNICHKKMANRVCLKMHLRIHTGECPYTCEHCGEKFRSSSILSTHIQKKHAEKTVSCPSCDSMFHFVREMRHHFKHVHWKGKDRPFDYKEVVPKMYHHLFEDGRLPKLDDNET

Summary

Pfam
PF00096   zf-C2H2        + More
PF01352   KRAB
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
IPR001909   KRAB       
IPR036051   KRAB_dom_sf       
IPR011017   TRASH_dom       
SUPFAM
SSF57667   SSF57667        + More
SSF109640   SSF109640       
PDB
2I13     E-value=6.44406e-18,     Score=224

Ontologies

Topology

Length:
577
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00022
Exp number, first 60 AAs:
0.00022
Total prob of N-in:
0.00105
outside
1  -  577
 
 

Population Genetic Test Statistics

Pi
234.999756
Theta
205.44891
Tajima's D
0.725477
CLR
1.188599
CSRT
0.581920903954802
Interpretation
Uncertain
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