HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	22.6	0.2	1.6e-06	9.5e-05	2	21	73	92
2	16.5	3.1	0.00014	0.0082	2	23	100	122
3	13.5	2.7	0.0012	0.071	2	19	128	145
4	7.9	0.3	0.073	4.4	3	23	155	175
5	6.5	0.4	0.2	12	1	17	178	194
6	17.3	0.8	7.4e-05	0.0044	1	23	210	233
7	11.3	1.0	0.0061	0.36	2	23	240	261
8	15.8	2.4	0.00022	0.013	1	23	267	289
9	6.1	1.0	0.27	16	1	23	295	318
10	13.9	4.9	0.00087	0.052	2	23	324	345

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.6e-06
                   EETTTTEEESSHHHHHHHHH CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHir 21
                   +C+dCg++Fk k +LkrH++
  KWMTBOMO14274 73 TCDDCGERFKAKWMLKRHMK 92
                   7******************8 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 0.00014
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                     Cp C+k F++ s+Lk Hi + H
  KWMTBOMO14274 100 SCPQCPKDFSTYSLLKGHIERmH 122
                    7******************9997 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 0.0012
                    EETTTTEEESSHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                    kC++C+k+F++  +L rH
  KWMTBOMO14274 128 KCKKCPKMFSTEKLLHRH 145
                    8***************** PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.073
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C   F++  +Lk+H+ +H
  KWMTBOMO14274 155 CKLCFVQFPSGKDLKVHLDKH 175
                    ******************999 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.2
                    EEETTTTEEESSHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLk 17 
                    ykCp C+ks  +k  Lk
  KWMTBOMO14274 178 YKCPRCDKSLLNKNTLK 194
                    9*******976665555 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 7.4e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+k + rk  L++H++t H
  KWMTBOMO14274 210 FFCDICKKGYARKNGLRTHLKTeH 233
                    78********************99 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.0061
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C+ C+k+F   s L++H  +H
  KWMTBOMO14274 240 SCKWCSKKFDAVSRLRNHTVKH 261
                    6*****************9988 PP

  == domain 8  score: 15.8 bits;  conditional E-value: 0.00022
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++Cg +F ++  L+ H r H
  KWMTBOMO14274 267 YHCEHCGNRFVTQAALVYHTRLH 289
                    89*******************99 PP

  == domain 9  score: 6.1 bits;  conditional E-value: 0.27
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C +sF + s  + H r+ H
  KWMTBOMO14274 295 FPCDMCEESFLSASRRMEHKRRkH 318
                    89********99999999999988 PP

  == domain 10  score: 13.9 bits;  conditional E-value: 0.00087
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +Cp+C+ +F + + Lk+H+ +H
  KWMTBOMO14274 324 ECPVCHTKFITTYCLKKHLERH 345
                    6*******************99 PP