HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	21.9	0.7	2.6e-06	0.00016	1	23	194	216
2	9.9	0.8	0.017	1	3	23	224	245
3	13.5	0.4	0.0012	0.073	1	23	251	273
4	22.3	1.6	1.9e-06	0.00012	1	23	278	300
5	17.0	2.9	9.2e-05	0.0055	1	23	306	328
6	22.9	3.6	1.2e-06	7.3e-05	1	23	334	357
7	14.3	6.1	0.00068	0.041	2	23	364	385
8	20.8	0.7	5.7e-06	0.00034	1	23	391	413
9	16.1	2.0	0.00018	0.011	1	23	419	441
10	23.2	0.3	1e-06	6.1e-05	1	23	447	469
11	20.1	2.9	9.5e-06	0.00057	1	23	475	497
12	7.3	2.2	0.11	6.6	1	23	503	522
13	25.0	0.8	2.8e-07	1.7e-05	1	23	528	550
14	9.6	7.2	0.021	1.2	1	23	556	578

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C k+F+ k +L++H r H
  KWMTBOMO14232 194 YSCEICEKRFTYKGSLEVHTRLH 216
                    89*******************99 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.017
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ Cg + +   +L+rHi   H
  KWMTBOMO14232 224 CHLCGTKLPGHKELTRHIADtH 245
                    ******************8777 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 0.0012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+++F  + +Lk+H+  H
  KWMTBOMO14232 251 FPCNACPEVFDKPRLLKQHLHAH 273
                    89*****************9887 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 1.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k+F+rk  Lk H++tH
  KWMTBOMO14232 278 FSCDVCSKVFRRKKGLKEHLKTH 300
                    89********************9 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 9.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+ksF ++  Lk+H  tH
  KWMTBOMO14232 306 FTCDICSKSFGHNQTLKSHVYTH 328
                    89******************999 PP

  == domain 6  score: 22.9 bits;  conditional E-value: 1.2e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++Cg+ F+++ +L+rHir+ H
  KWMTBOMO14232 334 HVCDVCGRGFPQRTHLRRHIRVlH 357
                    79*******************998 PP

  == domain 7  score: 14.3 bits;  conditional E-value: 0.00068
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C +C+k F++ks L++H r H
  KWMTBOMO14232 364 ACAVCHKHFSSKSYLRVHERQH 385
                    6*******************99 PP

  == domain 8  score: 20.8 bits;  conditional E-value: 5.7e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C +sF     Lk+H+r+H
  KWMTBOMO14232 391 YSCDLCQRSFAAYTTLKVHMRVH 413
                    89********************9 PP

  == domain 9  score: 16.1 bits;  conditional E-value: 0.00018
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cg+ F +  ++k H+rtH
  KWMTBOMO14232 419 YSCDFCGRQFAQMTSFKLHQRTH 441
                    89********************9 PP

  == domain 10  score: 23.2 bits;  conditional E-value: 1e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+k+F ++  Lk H+r+H
  KWMTBOMO14232 447 YTCNVCKKPFADNGYLKIHLRIH 469
                    9*********************9 PP

  == domain 11  score: 20.1 bits;  conditional E-value: 9.5e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+++F+   +LkrH+r+H
  KWMTBOMO14232 475 YSCEICKRCFRETGQLKRHLRIH 497
                    89********************9 PP

  == domain 12  score: 7.3 bits;  conditional E-value: 0.11
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C+k      nL +H+r+H
  KWMTBOMO14232 503 YTCRICNKQI---GNLSKHMRVH 522
                    8999999988...********99 PP

  == domain 13  score: 25.0 bits;  conditional E-value: 2.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+k F+ + nLk H+rtH
  KWMTBOMO14232 528 FSCTICNKEFSVNGNLKLHMRTH 550
                    89********************9 PP

  == domain 14  score: 9.6 bits;  conditional E-value: 0.021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ C+  F+++s LkrH++ H
  KWMTBOMO14232 556 YSCELCHSHFTQSSGLKRHRCAH 578
                    89*****************9988 PP