HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.3	4.2	0.00068	0.041	3	23	228	250
2	20.9	0.4	5.6e-06	0.00033	1	23	255	277
3	16.3	0.7	0.00015	0.0092	1	23	283	307
4	24.7	0.4	3.5e-07	2.1e-05	1	23	313	337

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 0.00068
                    ET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 Cp..dCgksFkrksnLkrHirtH 23 
                    Cp  +C+k+F+++s +++H+ tH
  KWMTBOMO14159 228 CPhkGCTKMFRDNSAMRKHLHTH 250
                    8889******************9 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk F  +s LkrH+ +H
  KWMTBOMO14159 255 HVCAECGKAFVESSKLKRHQLVH 277
                    79******************999 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 0.00015
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    ++C+  +Cgk+F+   nL++H r+H
  KWMTBOMO14159 283 FQCTfeGCGKRFSLDFNLRTHVRIH 307
                    89*********************99 PP

  == domain 4  score: 24.7 bits;  conditional E-value: 3.5e-07
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+Cp  +C+k+F ++ nLk+Hi tH
  KWMTBOMO14159 313 YVCPfdGCNKKFAQSTNLKSHILTH 337
                    99**********************9 PP